PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma19g00300.1
Common NameZOSMA_19G00300
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 454aa    MW: 50925.5 Da    PI: 7.3835
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma19g00300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.7e-17337434296
                      EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      +k+l +sdv+++gr+vlpkk ae +   + ++e+++l+++d + + +W++k++y  ++ks++y+++ ++ +Fv+ +gLk+gDf+  +l++  ++
  Zosma19g00300.1 337 KKELRRSDVSSLGRIVLPKKQAEGYlpYLTQKEGIQLQMRDfTYSGVWTFKYRYwpNNKSRMYIME-NTGDFVRIHGLKTGDFFAVYLEH-CSG 428
                      588999*********************555568899*****8899*********766666666665.********************987.777 PP

                      ..EEEE CS
               B3  91 elvvkv 96 
                      ++ v+ 
  Zosma19g00300.1 429 TFIVRG 434
                      677765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-23335434IPR015300DNA-binding pseudobarrel domain
CDDcd100174.57E-21336433No hitNo description
SuperFamilySSF1019361.39E-19336430IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-13336436IPR003340B3 DNA binding domain
PROSITE profilePS508639.361336438IPR003340B3 DNA binding domain
PfamPF023625.9E-13338433IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEKGGEGEFH RFSHFLNTFP HLKGSFSTVP TTTSPDWPPP LPSPSPSRGV FLNDKTTITN  60
VDHSFRSLED VGGVHQTNGD GLTNTFLSNF QSQSGGAYDP SGSEQVRNPY TLQSFFSENV  120
RSSGTVPGRS VDMANGGRKQ SCINESDFFS LKEPNSPGFP IKTPENGNLL VGGSHQKIST  180
TSSSSLELFH GEESNEIHNI NRQLNTTWFQ TYDYDCNYNC NCNYNFNYNS SVVSEDTPMI  240
LPTRKKKFVP VQQNHVRSGW NFIPYGVNTT NLSQIVMDPV LHFWQQRVLE TSQIYQKNSP  300
SPSPSTSGGN QILSSTSVCI DTDDKELERR GLSIVLKKEL RRSDVSSLGR IVLPKKQAEG  360
YLPYLTQKEG IQLQMRDFTY SGVWTFKYRY WPNNKSRMYI MENTGDFVRI HGLKTGDFFA  420
VYLEHCSGTF IVRGMKHDGG AERSQSQGNE NVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A2e-353324361105B3 domain-containing transcription factor FUS3
6j9b_D2e-353324361105B3 domain-containing transcription factor FUS3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMZ90.0A0A0K9PMZ9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.14e-37B3 family protein