PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma199g00350.1
Common NameZOSMA_199G00350
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 136aa    MW: 15486.1 Da    PI: 9.9107
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma199g00350.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR136.61.5e-112623190
              FAR1 31 rtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                      r++ Cskeg+ +     +  +rr++a +r+gC a++k+k+e   ++w v+++ l+HnH l+
  Zosma199g00350.1  2 RRLLCSKEGTVDLLYPLKLGKRRNNAISRCGCFASIKIKREGmFEVWIVKHIILQHNHLLT 62
                      7899******9998888899*********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-8262IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MRRLLCSKEG TVDLLYPLKL GKRRNNAISR CGCFASIKIK REGMFEVWIV KHIILQHNHL  60
LTTPSKVRFL PINRSITSTS RLLFQSLSEV NVPVSQQTTY FSSQVGGIEH MGCTQLDISK  120
MCRDDRVDLK NYDVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723LKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PNI17e-96A0A0K9PNI1_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-11FAR1-related sequence 5