PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma198g00250.1 | ||||||||
Common Name | ZOSMA_198G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 188aa MW: 20986.7 Da PI: 9.4985 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ l +v++ G g +W + +++ g++R++k+c++rw++yl Zosma198g00250.1 14 RGSWSPEEDKALRTYVEKNGIGgNWISLPQKAGLTRCGKSCRLRWLNYL 62 89******************999************************97 PP | |||||||
2 | Myb_DNA-binding | 45.6 | 1.6e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd ++ + k+lG++ W+ Ia+ ++ gRt++++k++w++ Zosma198g00250.1 69 GGFTEEEDIFILTLYKRLGSR-WSVIASQLP-GRTDNDVKNYWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.539 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.88E-28 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.2E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.04E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.848 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-13 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.71E-10 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MGKATCCDSS KVKRGSWSPE EDKALRTYVE KNGIGGNWIS LPQKAGLTRC GKSCRLRWLN 60 YLRPDIRHGG FTEEEDIFIL TLYKRLGSRW SVIASQLPGR TDNDVKNYWN TKLKKKVLGS 120 SSKHKHKHTT VGISSNNSSN SHESVTVERT TVMAIDNPAG VGSADELLTM DFGQWISSDL 180 FNWCDFV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 9 | 117 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014508343.1 | 5e-70 | transcription factor MYB36 | ||||
Swissprot | Q9FKL2 | 8e-65 | MYB36_ARATH; Transcription factor MYB36 | ||||
TrEMBL | A0A0K9PNK1 | 1e-136 | A0A0K9PNK1_ZOSMR; Myb domain protein 4 | ||||
STRING | ERN15245 | 4e-69 | (Amborella trichopoda) | ||||
STRING | XP_007154791.1 | 7e-69 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-60 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Zosma198g00250.1 |
Publications ? help Back to Top | |||
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