PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma196g00260.1
Common NameZOSMA_196G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 269aa    MW: 29923.9 Da    PI: 7.3948
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma196g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.75.9e-111642127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                      ++++ C +f+rt  Ck+G++C+F+H++
  Zosma196g00260.1 16 PGEPDCLYFMRTQKCKFGNTCRFNHPK 42
                      5789*********************96 PP
2zf-CCCH21.83.2e-076285427
                      ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  4 elCrffartGtCkyGdrCkFaHgp 27
                      ++C+++a+tG C +G  C ++H++
  Zosma196g00260.1 62 PICSYYAKTGNCMFGVHCIYNHPK 85
                      89********************96 PP
3zf-CCCH39.59.2e-13110135227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++ C+f++rtG CkyG++C+++H++
  Zosma196g00260.1 110 EEPDCPFYLRTGSCKYGATCRYSHPE 135
                       5799********************96 PP
4zf-CCCH32.81.2e-10177202227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       +   C+f+++tG+Ck+  +CkF+H+p
  Zosma196g00260.1 177 GKTVCHFYMKTGQCKFAVTCKFHHPP 202
                       5678********************97 PP
5zf-CCCH22.42.2e-07227248627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+f+ ++ +C yG++C++ H+p
  Zosma196g00260.1 227 CPFYKKNNHCMYGATCRYDHPP 248
                       ********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-41542IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6571543IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-81742IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-62045IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3855886IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-45885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-56186IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-56285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-46387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145108136IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-7108135IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-10110135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-6111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5114135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098175203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5175203IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-5175202IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8177202IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061221249IPR000571Zinc finger, CCCH-type
SMARTSM003560.0093221248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5224248IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4226248IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4227248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MQVPLSPLNE CLPERPGEPD CLYFMRTQKC KFGNTCRFNH PKDNFNAETA DASTFPERPH  60
EPICSYYAKT GNCMFGVHCI YNHPKDLQIP GFSVSPASMH NTKGLPIRPE EPDCPFYLRT  120
GSCKYGATCR YSHPEWNGQT IYQPLGNMNL SASFIPNTDP GLPQADQGSS IYPQRPGKTV  180
CHFYMKTGQC KFAVTCKFHH PPNWTAPKED VELTAAGLPR REGSIMCPFY KKNNHCMYGA  240
TCRYDHPPVE EVTVTLAGEG AAATEVNA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020265075.11e-100zinc finger CCCH domain-containing protein 8
SwissprotQ941Q35e-84C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0K9PR440.0A0A0K9PR44_ZOSMR; Uncharacterized protein
STRINGXP_008791420.14e-95(Phoenix dactylifera)
STRINGGSMUA_Achr1P28040_0012e-95(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.12e-86floral homeotic protein (HUA1)