PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma193g00360.1 | ||||||||
Common Name | ZOSMA_193G00360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 31326.2 Da PI: 5.6756 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.8e-17 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg WT eEd+ll++++ +G g+W++ +++ g++Rt+k+c++rw++yl Zosma193g00360.1 23 RGQWTLEEDLLLANCISIHGEGRWNLLSQRAGLRRTGKSCRLRWLNYL 70 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.2 | 5.8e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++ Zosma193g00360.1 76 RGNITMEEQLLILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.787 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.11E-29 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-16 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-21 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.89E-10 | 26 | 70 | No hit | No description |
PROSITE profile | PS51294 | 23.312 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-13 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.9E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.31E-10 | 82 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEFMYSSAQE VEPRMATEKQ LRRGQWTLEE DLLLANCISI HGEGRWNLLS QRAGLRRTGK 60 SCRLRWLNYL RPDVRRGNIT MEEQLLILQL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTK 120 VQKSAKQLNC NVNSQQFKNL MHYIWIPRLM EKIYHAKSIA PGTIITADDN INNNNSNNIV 180 INYNNNKQYL PESSMDATSQ LSELSQVNGG DVVNLSDEIN INPCVEAGKY GLNDIDEGLL 240 ELDDDGRVID EISEQFWTSL DDETFWSLTH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-23 | 20 | 125 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383942.1 | 2e-80 | PREDICTED: transcription factor MYB108 | ||||
Refseq | XP_011027944.1 | 8e-80 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A0K9PRD9 | 0.0 | A0A0K9PRD9_ZOSMR; Transcription factor MYB24 | ||||
STRING | GSMUA_Achr11P16130_001 | 6e-80 | (Musa acuminata) | ||||
STRING | GSMUA_Achr11P20830_001 | 6e-79 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 3e-73 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | Zosma193g00360.1 |