PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma193g00360.1
Common NameZOSMA_193G00360
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 271aa    MW: 31326.2 Da    PI: 5.6756
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma193g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.8e-172370148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg WT eEd+ll++++  +G g+W++ +++ g++Rt+k+c++rw++yl
  Zosma193g00360.1 23 RGQWTLEEDLLLANCISIHGEGRWNLLSQRAGLRRTGKSCRLRWLNYL 70
                      89********************************************97 PP

2Myb_DNA-binding50.25.8e-1676119146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Zosma193g00360.1  76 RGNITMEEQLLILQLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 119
                       7899******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.7871870IPR017930Myb domain
SuperFamilySSF466893.11E-2921117IPR009057Homeodomain-like
SMARTSM007171.5E-132272IPR001005SANT/Myb domain
PfamPF002493.4E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-212477IPR009057Homeodomain-like
CDDcd001676.89E-102670No hitNo description
PROSITE profilePS5129423.31271125IPR017930Myb domain
SMARTSM007171.3E-1375123IPR001005SANT/Myb domain
PfamPF002498.9E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2278124IPR009057Homeodomain-like
CDDcd001674.31E-1082119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MEFMYSSAQE VEPRMATEKQ LRRGQWTLEE DLLLANCISI HGEGRWNLLS QRAGLRRTGK  60
SCRLRWLNYL RPDVRRGNIT MEEQLLILQL HSRWGNRWSK IAQHLPGRTD NEIKNYWRTK  120
VQKSAKQLNC NVNSQQFKNL MHYIWIPRLM EKIYHAKSIA PGTIITADDN INNNNSNNIV  180
INYNNNKQYL PESSMDATSQ LSELSQVNGG DVVNLSDEIN INPCVEAGKY GLNDIDEGLL  240
ELDDDGRVID EISEQFWTSL DDETFWSLTH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-23201251105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009383942.12e-80PREDICTED: transcription factor MYB108
RefseqXP_011027944.18e-80PREDICTED: transcription factor MYB108-like
TrEMBLA0A0K9PRD90.0A0A0K9PRD9_ZOSMR; Transcription factor MYB24
STRINGGSMUA_Achr11P16130_0016e-80(Musa acuminata)
STRINGGSMUA_Achr11P20830_0016e-79(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-73myb domain protein 112