PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma192g00220.1

Common Name

ZOSMA_192G00220

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 328aa MW: 36976.1 Da PI: 5.9141

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma192g00220.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.5	5.5e-53	10	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL +k+e+++ +++ v i e+d++ +ePwdLp+k+k + +ewyfF +rd+ky+tg+r+nrat+sgyWkatg+dke Zosma192g00220.1 10 LPPGFRFHPTDEELITHYLIRKIEDTTGSFSAVaIGEADMNLSEPWDLPSKAKMaDADEWYFFYERDRKYPTGSRTNRATNSGYWKATGRDKE 102 79***********************7777777***********655551556******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s ++ +g+kktLvfykgrapkg++t+W+mhe+r+ Zosma192g00220.1 103 IHS-NNGIIGMKKTLVFYKGRAPKGTRTSWIMHEFRM 138 .8889**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-58	8	159	IPR003441	NAC domain
PROSITE profile	PS51005	58.144	10	159	IPR003441	NAC domain
Pfam	PF02365	5.8E-28	11	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MKDDEVSIFL PPGFRFHPTD EELITHYLIR KIEDTTGSFS AVAIGEADMN LSEPWDLPSK 60 AKMADADEWY FFYERDRKYP TGSRTNRATN SGYWKATGRD KEIHSNNGII GMKKTLVFYK 120 GRAPKGTRTS WIMHEFRMQP RVNSFCQDDQ WVVCRVFNRK DIKKNTVSPP PPLLYSSPVE 180 TDLITPAKSQ MTGTTQTSSI SCNSYDDYNQ QYQLSLDYSN VSAYFQDKLD NPTSNTPVFF 240 NNLDEYSDLY SDGLPSSVAS HGMIRRHCKL ADQYNYSVLP EPLMGSSNSN GSPATITEYY 300 TGGDGYASSA TPAPKMVDTH SLVNVYN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-50	3	160	10	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-50	3	160	10	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-50	3	160	10	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-50	3	160	10	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	3	160	13	169	NAC domain-containing protein 19
3swm_B	2e-50	3	160	13	169	NAC domain-containing protein 19
3swm_C	2e-50	3	160	13	169	NAC domain-containing protein 19
3swm_D	2e-50	3	160	13	169	NAC domain-containing protein 19
3swp_A	2e-50	3	160	13	169	NAC domain-containing protein 19
3swp_B	2e-50	3	160	13	169	NAC domain-containing protein 19
3swp_C	2e-50	3	160	13	169	NAC domain-containing protein 19
3swp_D	2e-50	3	160	13	169	NAC domain-containing protein 19
3ulx_A	2e-50	2	161	7	170	Stress-induced transcription factor NAC1
4dul_A	1e-50	3	160	10	166	NAC domain-containing protein 19
4dul_B	1e-50	3	160	10	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313983.1	1e-71	NAC domain-containing protein 92-like
Refseq	NP_001314138.1	1e-71	NAC domain-containing protein 92-like
Refseq	XP_012489590.1	1e-71	PREDICTED: NAC domain-containing protein 100
Refseq	XP_017627795.1	1e-71	PREDICTED: NAC domain-containing protein 92-like
TrEMBL	A0A0K9PRH9	0.0	A0A0K9PRH9_ZOSMR; NAC domain-containing protein 10
STRING	Gorai.007G079900.1	4e-71	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1452	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39610.1	7e-70	NAC domain containing protein 6

Link Out ? help Back to Top
Phytozome	Zosma192g00220.1