PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma18g01140.1 | ||||||||
Common Name | ZOSMA_18G01140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 219aa MW: 24168.4 Da PI: 6.908 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.1 | 5.6e-12 | 42 | 88 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr ll + +K +Ka+ L kAv ++++L Zosma18g01140.1 42 RNHREAEKRRRERIKSHLDRLRHLLSCD-----PKIDKATLLAKAVAHVRDL 88 78***********************997.....7***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.17 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 42 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-12 | 42 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.7E-13 | 43 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.5E-10 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 4.6E-5 | 118 | 185 | No hit | No description |
CDD | cd04873 | 0.00113 | 122 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MYSDVYGRLG STSAAGGGGF MAAALSAATS TIAVDRAGIA SRNHREAEKR RRERIKSHLD 60 RLRHLLSCDP KIDKATLLAK AVAHVRDLKQ QTSQIPDVDR FPTEIDSITI STTADRSNIL 120 KVTLCCDDRP RLFPDLIDTL KSLRLRTVRA ELATVCGRVR CVFLVAKETE DEEEEEEEVL 180 REALKAVVEK DVTGAGGSSV GCDRMKRRRV VERDDDDD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 209 | KRRRV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010271836.1 | 7e-59 | PREDICTED: transcription factor bHLH106-like | ||||
Swissprot | O80674 | 2e-44 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A0K9PPW8 | 1e-153 | A0A0K9PPW8_ZOSMR; Uncharacterized protein | ||||
STRING | XP_010271836.1 | 3e-58 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9578 | 30 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 1e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma18g01140.1 |
Publications ? help Back to Top | |||
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