PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma189g00230.1
Common NameZOSMA_189G00230
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 382aa    MW: 41929.9 Da    PI: 7.5483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma189g00230.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+ ++ + G g+W++ + + g+ R++k+c++rw +yl
  Zosma189g00230.1 14 KGPWTPEEDKKLLAYIDENGHGSWRALPPKAGLQRCGKSCRLRWTNYL 61
                      79********************************************97 PP
2Myb_DNA-binding49.97.5e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+++ +E+  +++++++lG++ W++Ia +++ +Rt++++k++w+++l
  Zosma189g00230.1  67 RGKFSIQEEHTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129415.424961IPR017930Myb domain
SuperFamilySSF466898.44E-2911108IPR009057Homeodomain-like
SMARTSM007176.3E-121363IPR001005SANT/Myb domain
PfamPF002491.9E-141461IPR001005SANT/Myb domain
CDDcd001677.41E-91661No hitNo description
PROSITE profilePS5129425.48662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565116IPR009057Homeodomain-like
SMARTSM007171.1E-1366114IPR001005SANT/Myb domain
PfamPF002492.9E-1567112IPR001005SANT/Myb domain
CDDcd001674.50E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MARSPCCEKL GLKKGPWTPE EDKKLLAYID ENGHGSWRAL PPKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SIQEEHTIIQ LHALLGNRWS AIATHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKN DTLSNGEGES KSAANLSHMA QWESARLEAE ARLVRESKFR STNTPSTSSS  180
SSFPAPVAPW LELFRTWHES RQTGQGCGVL NKNGQSSHMG IDMESPTSTL SFSENNTIVE  240
ELADWKCLPR PSAGGGYSLS TPLLLMNSHG GGMAMSSDNS SSWVQDVKVV KQGGGSGSLL  300
NGNFGDGLTE MVIIEKYSDE QVDSSSEEGI CGDHNNNGGG ISMRSLGFNC DNEDENKSYW  360
NSLINLMNSS NNPSVSSPPL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258286.11e-125PREDICTED: transcription factor MYB34-like
SwissprotQ9LE631e-111MY106_ARATH; Transcription factor MYB106
TrEMBLA0A0K9PS670.0A0A0K9PS67_ZOSMR; Uncharacterized protein
STRINGXP_010258286.11e-125(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56093758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-107myb domain protein 106