PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma189g00120.1
Common NameZOSMA_189G00120
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 335aa    MW: 36586.8 Da    PI: 4.6293
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma189g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.3e-18118167255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Zosma189g00120.1 118 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 167
                       69*******.**********954...4************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.182118175IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-31118177IPR001471AP2/ERF domain
CDDcd000185.51E-33118177No hitNo description
SuperFamilySSF541712.03E-21118177IPR016177DNA-binding domain
SMARTSM003804.5E-37118181IPR001471AP2/ERF domain
PRINTSPR003673.0E-11119130IPR001471AP2/ERF domain
PfamPF008472.1E-11119167IPR001471AP2/ERF domain
PRINTSPR003673.0E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MCGGAILSDF IPVGISSLEV KVTSDDLWSV DASGKDYAAG KRKRNINKNK KVEKFDEEEE  60
EDFEADFREF QDEEEFDVKP LDCLPKSPVS SQITGAKLLA PKATGSAPKC ASKKRKNQFR  120
GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDV EARRIRGAKA KVNFTDSKSS  180
VTLTPEAPTK ISKKITTTKP TVPAALFNGG GGGAGFSFQS GQSSNSLEGS EFGFESESKS  240
SEITSVLSME TETETAFPQK KLKNNSGEAF AMEEELSDDF LGFEPYVKFL QVPYAEGSSD  300
NSIDDLLSND LTLDCGESLL NLWGFDDLPG TTIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20118174259ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115PKCASKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008784363.15e-84ethylene-responsive transcription factor 1-like
RefseqXP_026658873.15e-84ethylene-responsive transcription factor 1-like
SwissprotQ6K7E63e-49ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0K9PQ030.0A0A0K9PQ03_ZOSMR; Ethylene-responsive transcription factor 1
STRINGXP_008784363.12e-83(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.16e-36ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]