PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma189g00120.1 | ||||||||
Common Name | ZOSMA_189G00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 335aa MW: 36586.8 Da PI: 4.6293 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 118 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ +++++g Zosma189g00120.1 118 QFRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 167 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.182 | 118 | 175 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.8E-31 | 118 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.51E-33 | 118 | 177 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-21 | 118 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.5E-37 | 118 | 181 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.1E-11 | 119 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MCGGAILSDF IPVGISSLEV KVTSDDLWSV DASGKDYAAG KRKRNINKNK KVEKFDEEEE 60 EDFEADFREF QDEEEFDVKP LDCLPKSPVS SQITGAKLLA PKATGSAPKC ASKKRKNQFR 120 GIRQRPWGKW AAEIRDPRKG VRVWLGTFNT AEEAARAYDV EARRIRGAKA KVNFTDSKSS 180 VTLTPEAPTK ISKKITTTKP TVPAALFNGG GGGAGFSFQS GQSSNSLEGS EFGFESESKS 240 SEITSVLSME TETETAFPQK KLKNNSGEAF AMEEELSDDF LGFEPYVKFL QVPYAEGSSD 300 NSIDDLLSND LTLDCGESLL NLWGFDDLPG TTIF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-20 | 118 | 174 | 2 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | PKCASKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008784363.1 | 5e-84 | ethylene-responsive transcription factor 1-like | ||||
Refseq | XP_026658873.1 | 5e-84 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 3e-49 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A0K9PQ03 | 0.0 | A0A0K9PQ03_ZOSMR; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008784363.1 | 2e-83 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 6e-36 | ethylene-responsive element binding protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma189g00120.1 |