PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma185g00330.1 | ||||||||
Common Name | ZOSMA_185G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GRAS | ||||||||
Protein Properties | Length: 498aa MW: 55571.3 Da PI: 5.3327 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 419.8 | 2.3e-128 | 126 | 497 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+++L++cA+a++++d+ ++ lL++l++++s +gdp++Rl ay+ e+L a+la+s+s++ykal+++e s++ l++++++++v+P++kf Zosma185g00330.1 126 LKQTLIACAKAIANDDMMITEMLLKQLEKMVSVSGDPLKRLGAYVYEGLLAKLASSGSSIYKALRCKEPI---STDLLSYMHILFDVCPYFKF 215 5799*****************************************************************9...9******************* PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 +++ aN aI ea+ ge+ vHiiDf+i +G QW++L++aLa++p+gpp+lRiTg+++p s+ + l+ +ge+La++Ae+++vpfef++ v Zosma185g00330.1 216 GYMSANGAIAEALRGENSVHIIDFQIAMGSQWVTLIRALAQQPGGPPHLRITGIDDPVSKyaRGGDLNLVGEKLASLAESCNVPFEFHP-VPV 307 *********************************************************99999999************************.577 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklp 276 ++++e+L++++gEala+n+++qlh+++desv++ ++rd+++++ kslsP+vv++veqe+++n++sF rfle++++y+a+f+++ +++l Zosma185g00330.1 308 FGWEVKIEHLEIRHGEALAINFAFQLHHMPDESVNTWNHRDRIIRMAKSLSPRVVTLVEQESNTNTASFYSRFLETIDFYTAMFETIdATQLT 400 777899*********************************************************************************9999** PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvs 369 r++ eri E+++++r+ivn++aceg er+erhe l kW+ r+++aGFk vpls ++++++klll++++++ +r+ e++g+l+lgWk+r++vs Zosma185g00330.1 401 RDNVERIHAEQHCVARDIVNIIACEGVERVERHELLTKWKTRFTMAGFKMVPLSPFVNSKIKLLLENYNEN-FRLVEDDGALYLGWKNRKMVS 492 *********************************************************************55.********************* PP GRAS 370 vSaWr 374 +aWr Zosma185g00330.1 493 SCAWR 497 ****8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 64.934 | 100 | 478 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.0E-126 | 126 | 497 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0004871 | Molecular Function | signal transducer activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MNQVQFHATQ PFQSLNDASS NDDSQLGIIP EQYSTPDSLG ASGYLINSSP STIGFTSTDG 60 SPLSQEIMLE NYGSPAGGFC VSEDTSHLKN KIRELEIAML GPEEFTGTNS LYSELNVPKV 120 IDYGDLKQTL IACAKAIAND DMMITEMLLK QLEKMVSVSG DPLKRLGAYV YEGLLAKLAS 180 SGSSIYKALR CKEPISTDLL SYMHILFDVC PYFKFGYMSA NGAIAEALRG ENSVHIIDFQ 240 IAMGSQWVTL IRALAQQPGG PPHLRITGID DPVSKYARGG DLNLVGEKLA SLAESCNVPF 300 EFHPVPVFGW EVKIEHLEIR HGEALAINFA FQLHHMPDES VNTWNHRDRI IRMAKSLSPR 360 VVTLVEQESN TNTASFYSRF LETIDFYTAM FETIDATQLT RDNVERIHAE QHCVARDIVN 420 IIACEGVERV ERHELLTKWK TRFTMAGFKM VPLSPFVNSK IKLLLENYNE NFRLVEDDGA 480 LYLGWKNRKM VSSCAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-61 | 128 | 497 | 6 | 375 | GRAS family transcription factor containing protein, expressed |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029116878.1 | 0.0 | scarecrow-like protein 21 | ||||
Refseq | XP_029116879.1 | 0.0 | scarecrow-like protein 21 | ||||
Swissprot | Q8GVE1 | 0.0 | CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2 | ||||
TrEMBL | A0A0K9PQJ0 | 0.0 | A0A0K9PQJ0_ZOSMR; GRAS family transcription factor | ||||
STRING | XP_008800637.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1513 | 37 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48150.2 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma185g00330.1 |
Publications ? help Back to Top | |||
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