PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma182g00060.1
Common NameZOSMA_182G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 317aa    MW: 36311.1 Da    PI: 6.4502
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma182g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-1892144456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +++++ eq+++Le+ F+  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Zosma182g00060.1  92 KRRLSLEQVKTLEKNFQVGNKLEPERKIQLATTLGLQPRQIAIWFQNRRARWK 144
                       557899**********************************************9 PP
2HD-ZIP_I/II126.71e-4091181292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kkrrls eqvk+LE++F+  +kLeperK +la++Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk++++++k+en++L ++++ L++++k
  Zosma182g00060.1  91 KKRRLSLEQVKTLEKNFQVGNKLEPERKIQLATTLGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQFEKVKSENDSLLAHNKILQAQIK 181
                       9**************************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.06E-1983148IPR009057Homeodomain-like
PROSITE profilePS5007116.47186146IPR001356Homeobox domain
SMARTSM003891.3E-1789150IPR001356Homeobox domain
CDDcd000862.44E-1591147No hitNo description
PfamPF000461.9E-1592144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-1893154IPR009057Homeodomain-like
PRINTSPR000312.9E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000312.9E-5126142IPR000047Helix-turn-helix motif
PfamPF021839.8E-15146187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MAYNIGMASA FYPANFLSRD HHHRRQQDQE EEEDEDHNTS LNPLMHGSTP AYQGVASYLK  60
KRSMSFQGLE AFEEMNGEDE LSDDFTQLGG KKRRLSLEQV KTLEKNFQVG NKLEPERKIQ  120
LATTLGLQPR QIAIWFQNRR ARWKTKQLEK DYDVLKKQFE KVKSENDSLL AHNKILQAQI  180
KGLRGKEAAS EPINLNVKET EASCSNRSEN SCGGENDRDR DRDDNHNTTT NMEIARKCDI  240
ENPASNSHQN IAFFQPIRTL REAQFLQNST GSHHQLQSCP KIEHGGGQEE NMCNIFTGFD  300
DHSTFWTPWS GHQNFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020275215.12e-99homeobox-leucine zipper protein HOX21-like
TrEMBLA0A0K9PSU90.0A0A0K9PSU9_ZOSMR; Homeobox-leucine zipper protein HOX21
STRINGXP_010242413.12e-96(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22893894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-72HD-ZIP family protein