PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma181g00420.1
Common NameZOSMA_181G00420
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 462aa    MW: 51902.1 Da    PI: 7.2133
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma181g00420.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.61.6e-142673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+ Ed  l+d+vk+ G g+W+++ +   + R++k+c++rw ++l
  Zosma181g00420.1 26 KGPWTAAEDNMLIDYVKMNGEGNWNAVQKNTDLARCGKSCRLRWANHL 73
                      79******************************************9986 PP
2Myb_DNA-binding47.44.5e-1579122146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE+ ++++++ + G++ W++ a  ++ gRt++++k++w++
  Zosma181g00420.1  79 KGSFTPEEERIILELHSKIGNK-WARMATQLP-GRTDNEIKNYWNT 122
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.6362173IPR017930Myb domain
SuperFamilySSF466892.47E-2923120IPR009057Homeodomain-like
SMARTSM007179.5E-122575IPR001005SANT/Myb domain
PfamPF002492.6E-132673IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-222780IPR009057Homeodomain-like
CDDcd001678.62E-102873No hitNo description
PROSITE profilePS5129425.16674128IPR017930Myb domain
SMARTSM007175.8E-1578126IPR001005SANT/Myb domain
PfamPF002494.5E-1479122IPR001005SANT/Myb domain
CDDcd001671.18E-1081122No hitNo description
Gene3DG3DSA:1.10.10.606.5E-2581127IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MMNGNGSGEG SSTNAVGGDV TGGMKKGPWT AAEDNMLIDY VKMNGEGNWN AVQKNTDLAR  60
CGKSCRLRWA NHLRPNLKKG SFTPEEERII LELHSKIGNK WARMATQLPG RTDNEIKNYW  120
NTRIKRRQRS GLPIYPPDIQ HRHNGFLYNQ NCQIPLARLN ETKSQFGRGN PLPRPLHSNQ  180
TSLSLLDPFP MGLSNHQTMA MSIPQPNMIS LQQQQHQYQH HVRQPPTVFP NSEGQSSFSR  240
MQHLKRLRND TLEYPGIFNN NSVSTAVPMG VPIVRFKPIL PSGSLMHLQR PPQQQHQSSH  300
LMPMKMELPS NQFLPASVSN HNSDPWIQQA NNNSGLLEAL LEDTQVANRR VSPEYIEPTD  360
EKTSEYKKMK IEPLEINISE SEDLSAFFDL INETNASSSS PSQATTSKWV KNECGEASGV  420
TEEDLIDMQQ LSSCIPKLSL EENDPQNWNQ WDDTSGTNGI S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30261277107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PQZ70.0A0A0K9PQZ7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.11e-67myb domain protein 101