PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma181g00320.1

Common Name

ZOSMA_181G00320

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Dof

Protein Properties

Length: 348aa MW: 37716 Da PI: 8.6239

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma181g00320.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.2	3.7e-38	51	111	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ lkcprC+s+ntkfCyynnysl+qPr++CkaC+ryWt+GG+lrnvPvGgg+rknk+++ Zosma181g00320.1 51 AHQPLKCPRCESSNTKFCYYNNYSLTQPRHLCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 111 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	50	104	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.4E-33	53	109	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	55	109	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	57	93	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MVLMPGGNRN RIGYTNHQGL SATTTTTART ADGANSISTV GGALIGTSTQ AHQPLKCPRC 60 ESSNTKFCYY NNYSLTQPRH LCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRSSSSFITA 120 TAANTTTVTA MVSDPNLFPN HVSTLSLPPT YSSCAMDPIF YGNSTGIDFP TTYPSSFLKK 180 LNHTTVNSYN PINSNLTSMG LCFPINAALP THQDCMTHPP NHLQFQQTDS SNSLFHDFSL 240 LGTSSFTTLR HPKTSINSTG WSANDRNIQA PVASGASDLR NFDGVKEEEE GRSIGVLDWQ 300 IQYDGDLFQN LNAVEGNSLY WNVNPLSGIS NTWPELPTAA TANHSVT*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MVLMPGGNRN RIGYTNHQGL SATTTTTART ADGANSISTV GGALIGTSTQ AHQPLKCPRC  60
ESSNTKFCYY NNYSLTQPRH LCKACKRYWT RGGTLRNVPV GGGCRKNKRV KRSSSSFITA  120
TAANTTTVTA MVSDPNLFPN HVSTLSLPPT YSSCAMDPIF YGNSTGIDFP TTYPSSFLKK  180
LNHTTVNSYN PINSNLTSMG LCFPINAALP THQDCMTHPP NHLQFQQTDS SNSLFHDFSL  240
LGTSSFTTLR HPKTSINSTG WSANDRNIQA PVASGASDLR NFDGVKEEEE GRSIGVLDWQ  300
IQYDGDLFQN LNAVEGNSLY WNVNPLSGIS NTWPELPTAA TANHSVT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PT15	0.0	A0A0K9PT15_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.2	8e-30	Dof family protein

Link Out ? help Back to Top
Phytozome	Zosma181g00320.1