PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma180g00130.1

Common Name

ZOSMA_180G00130

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NAC

Protein Properties

Length: 270aa MW: 31149.4 Da PI: 8.9718

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma180g00130.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	152	2.7e-47	4	128	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeel+v+yL++ +gk+ +++i ++diy++ePwdLp ++k +e+ewyfF++rd+k g r+nr+t++g+Wkatg+d++v+ Zosma180g00130.1 4 PGFRFHPTDEELLVFYLRQAGHGKD--SFNIIGSLDIYRHEPWDLPGMAKIGEREWYFFVPRDRKRVYGGRPNRTTERGFWKATGSDRSVYGV 94 9***************9999888..4478***********888999***********************************98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ ++glkktLvfy+grap+g ktdWvm+eyrl Zosma180g00130.1 95 gRKDVIGLKKTLVFYRGRAPRGLKTDWVMNEYRL 128 67778*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	54.525	2	148	IPR003441	NAC domain
SuperFamily	SSF101941	8.37E-53	3	148	IPR003441	NAC domain
Pfam	PF02365	1.1E-24	4	128	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009965	Biological Process	leaf morphogenesis
GO:0010200	Biological Process	response to chitin
GO:0045792	Biological Process	negative regulation of cell size
GO:0048281	Biological Process	inflorescence morphogenesis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MELPGFRFHP TDEELLVFYL RQAGHGKDSF NIIGSLDIYR HEPWDLPGMA KIGEREWYFF 60 VPRDRKRVYG GRPNRTTERG FWKATGSDRS VYGVGRKDVI GLKKTLVFYR GRAPRGLKTD 120 WVMNEYRLPT ATTSVPHDDM VLCKVYRKAT SIRVLEQRAR NTGEFSAPQT PELEMDSKYL 180 GLEDVKKVEE LSAYSSSAKK RFPELKLEVP AAMTSFQRII QDPIFTQLRS PWSPYSNLLS 240 FCDQNLSFVY DDTFCPTDQD HQVWLGPAQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-48	4	151	22	171	NAC domain-containing protein 19
3swm_B	2e-48	4	151	22	171	NAC domain-containing protein 19
3swm_C	2e-48	4	151	22	171	NAC domain-containing protein 19
3swm_D	2e-48	4	151	22	171	NAC domain-containing protein 19
3swp_A	2e-48	4	151	22	171	NAC domain-containing protein 19
3swp_B	2e-48	4	151	22	171	NAC domain-containing protein 19
3swp_C	2e-48	4	151	22	171	NAC domain-containing protein 19
3swp_D	2e-48	4	151	22	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020093751.1	2e-88	NAC domain-containing protein 35
Swissprot	Q10S65	7e-80	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A0K9PT41	0.0	A0A0K9PT41_ZOSMR; NAC domain protein
STRING	GSMUA_Achr11P01320_001	1e-83	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1770	38	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17040.1	1e-76	NAC domain containing protein 36

Link Out ? help Back to Top
Phytozome	Zosma180g00130.1

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]