PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00430.1
Common NameZOSMA_17G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 288aa    MW: 31229.1 Da    PI: 8.0373
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.7e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd  l ++ +++G+g +W + +++ g++R++k+c++rw++yl
  Zosma17g00430.1 14 RGPWSPEEDAALRNYLHRHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.84.5e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  + + lG++ W+ Ia++++  Rt++++k++w++
  Zosma17g00430.1  69 GGFTEEEDNIICTLYRSLGSR-WSVIASKLQ-CRTDNDVKNYWNT 111
                      569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.087962IPR017930Myb domain
SuperFamilySSF466891.33E-2511109IPR009057Homeodomain-like
SMARTSM007171.4E-111364IPR001005SANT/Myb domain
PfamPF002492.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-241569IPR009057Homeodomain-like
CDDcd001676.26E-91662No hitNo description
PROSITE profilePS5129421.75263117IPR017930Myb domain
SMARTSM007171.2E-1067115IPR001005SANT/Myb domain
PfamPF002499.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-2270117IPR009057Homeodomain-like
CDDcd001678.52E-971113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCDKT NVKRGPWSPE EDAALRNYLH RHGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPDIKHGG FTEEEDNIIC TLYRSLGSRW SVIASKLQCR TDNDVKNYWN TKLKKKVMMA  120
SAAAAAGQAN LAAQQQQPRV PLPLPPTSLT YVVPMEFNPG FNIDQNPIIF NGSANSRYVI  180
SPPAPGTAQE NSYEYMSWAA NSSNCGSGGG GGGEDDIHGG LMMGMSQLEE SSPPDLLNWY  240
GFQSRIGEAA SYNNYDGSSS SGLPNMGANA IEGKPSHGLY LESLAYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-23141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008794081.16e-77transcription factor RAX2-like
TrEMBLA0A0K9PQY40.0A0A0K9PQY4_ZOSMR; Transcription repressor MYB4
STRINGXP_008794081.12e-76(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-69MYB family protein