PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma179g00140.1 | ||||||||
Common Name | ZOSMA_179G00140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 139aa MW: 15673.9 Da PI: 10.6214 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.3 | 1.4e-19 | 2 | 89 | 5 | 90 |
FAR1 5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 YA ++GF+vr+ ++k + ++e++ r+f Csk+g++ +++++ +e+++r+ ++r gC a++ +++++ +g w+v ++ ++HnH+++ Zosma179g00140.1 2 GYAGNIGFNVRMGSTKMN--DREMVGRRFLCSKQGYALSTDTAnnvNERKHRRIRNSRSGCLAMIYISLDRsTGLWRVVNFIEDHNHPMV 89 5************98887..8899************998888777777777788899************999***************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-17 | 2 | 89 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MGYAGNIGFN VRMGSTKMND REMVGRRFLC SKQGYALSTD TANNVNERKH RRIRNSRSGC 60 LAMIYISLDR STGLWRVVNF IEDHNHPMVT PSKRRYLPVN RVITPLSRAL FKSLNTSNIS 120 PSDQYCVATQ EAGGFDHM* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PR96 | 2e-99 | A0A0K9PR96_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1424 | 4 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma179g00140.1 |