PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma178g00500.1
Common NameZOSMA_178G00500
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family RAV
Protein Properties Length: 335aa    MW: 38155.1 Da    PI: 9.6987
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma178g00500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.6e-113280155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      s+ykGV   + +grW ++I++      + r++lg+f  + +Aaka++ a+ +++g
  Zosma178g00500.1 32 SQYKGVVPQP-NGRWGSQIYEK-----HHRVWLGTFNDEVDAAKAYDIAATRFRG 80
                      78****9888.8*********3.....5**********99***********9998 PP
2B394.47.6e-30159257197
                       EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k+ tpsdv+k++rlv+pk++ae+h         ++  l +ed+ g++W+++++y+++s+ yvltkGW++Fvk+++L++gD v F+++  s+
  Zosma178g00500.1 159 FEKAVTPSDVGKLNRLVIPKHHAEKHfpikT--ADKGLLLNFEDTGGKVWRFRYSYWNSSQCYVLTKGWSRFVKEKNLNAGDLVGFYRSVGSD 249
                       89************************97532..347789************************************************886688 PP

                       E..EEEEE CS
                B3  90 felvvkvf 97 
                        +l+v + 
  Zosma178g00500.1 250 DKLYVDWK 257
                       88999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-213287No hitNo description
SuperFamilySSF541717.19E-153288IPR016177DNA-binding domain
SMARTSM003803.5E-243394IPR001471AP2/ERF domain
PROSITE profilePS5103218.4653388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.8E-183388IPR001471AP2/ERF domain
PfamPF008471.4E-43380IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.8E-38151262IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-29157252IPR015300DNA-binding pseudobarrel domain
CDDcd100175.73E-28158254No hitNo description
SMARTSM010192.0E-25159260IPR003340B3 DNA binding domain
PfamPF023623.0E-27159258IPR003340B3 DNA binding domain
PROSITE profilePS5086313.662159260IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSDSTTGAGR DGGRSTTVVQ VQGGEIRKLP SSQYKGVVPQ PNGRWGSQIY EKHHRVWLGT  60
FNDEVDAAKA YDIAATRFRG RDVVVNFGQL STAEDDDYNM ELVFLNSHSK TEIVDMLRRH  120
TYYDELQQSR RREVGNSTTM VFGHRYSLQQ PPQARQLLFE KAVTPSDVGK LNRLVIPKHH  180
AEKHFPIKTA DKGLLLNFED TGGKVWRFRY SYWNSSQCYV LTKGWSRFVK EKNLNAGDLV  240
GFYRSVGSDD KLYVDWKHKN TSTSGYYPYV VLPMPLPVPV PPPPVQVMRL FGVNIVKEPN  300
TTTIDVAVGN DWDEKRRRDI EAQFLYKKQC IGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-5315626211120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262942.11e-126PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-112RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A0K9PRR60.0A0A0K9PRR6_ZOSMR; Auxin response factor 17
STRINGAquca_026_00225.11e-126(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-112related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]