PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma178g00020.1

Common Name

ZOSMA_178G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 353aa MW: 40452.2 Da PI: 9.9787

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma178g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.2	8.8e-13	114	198	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++ + +L++ +r++l+ W evskk+ ++ r+ qC+++++ l+k+ykk+k+ + + +s +++yf+++e Zosma178g00020.1 114 WTEDSTFVLLDSWGVFYVMNGRKSLRSDEWMEVSKKVnDATRNPRTDAQCRNRIDTLKKKYKKEKAKIAESICLDS-RWVYFKKME 198 ************9999999************6566679**********************999.9******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.1E-17	113	200	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MNDMSSGASQ QTRIYPKEEN GNKSNAYLSI GNQANGDGDG DEEEKGKYDV RVSGYRRARK 60 EGESSNDSRG RRRKLNNCAS GFQLVPRTEL PLISVSSSVA LTSKTHNRKN PADWTEDSTF 120 VLLDSWGVFY VMNGRKSLRS DEWMEVSKKV NDATRNPRTD AQCRNRIDTL KKKYKKEKAK 180 IAESICLDSR WVYFKKMEQL MGMPKQHAVV PLRRRQRQKP SNLNGTRDNP LGSQLISHGS 240 NGLPSQNLKK SSDDPLSTSF KVLVDSIKKI GMVYENINIS NRNHMLKLKN MRMEFERDLE 300 SQSQRILERA MREHKRLRRE ERYNDEKSED SDEENNDNKG IECSDSVQNE TS*

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MNDMSSGASQ QTRIYPKEEN GNKSNAYLSI GNQANGDGDG DEEEKGKYDV RVSGYRRARK  60
EGESSNDSRG RRRKLNNCAS GFQLVPRTEL PLISVSSSVA LTSKTHNRKN PADWTEDSTF  120
VLLDSWGVFY VMNGRKSLRS DEWMEVSKKV NDATRNPRTD AQCRNRIDTL KKKYKKEKAK  180
IAESICLDSR WVYFKKMEQL MGMPKQHAVV PLRRRQRQKP SNLNGTRDNP LGSQLISHGS  240
NGLPSQNLKK SSDDPLSTSF KVLVDSIKKI GMVYENINIS NRNHMLKLKN MRMEFERDLE  300
SQSQRILERA MREHKRLRRE ERYNDEKSED SDEENNDNKG IECSDSVQNE TS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PRP4	0.0	A0A0K9PRP4_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-30	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Zosma178g00020.1