PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma174g00060.1
Common NameZOSMA_174G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 428aa    MW: 47683.3 Da    PI: 7.9259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma174g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31194251260
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                       dDgynWrKYGqK+vkg+e+prsYY+C+ ++Cp+kk ve +  d++++ei+Y+g Hnh+k
  Zosma174g00060.1 194 DDGYNWRKYGQKQVKGNENPRSYYKCSNPNCPTKKIVEIAI-DGRITEIVYKGVHNHPK 251
                       8***************************************9.***************85 PP
2WRKY103.51.1e-32343401159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+ +prsYY+Cts gC v+k+versa+d ++v++tYeg+H h+
  Zosma174g00060.1 343 LDDGYRWRKYGQKVVKGNSNPRSYYKCTSLGCLVRKQVERSAHDASAVITTYEGKHLHD 401
                       59*******************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26189252IPR003657WRKY domain
SuperFamilySSF1182902.62E-24190252IPR003657WRKY domain
SMARTSM007742.3E-33193251IPR003657WRKY domain
PROSITE profilePS5081122.71194252IPR003657WRKY domain
PfamPF031068.3E-24194250IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-35328403IPR003657WRKY domain
SuperFamilySSF1182901.96E-28335403IPR003657WRKY domain
PROSITE profilePS5081135.255338403IPR003657WRKY domain
SMARTSM007742.9E-38343402IPR003657WRKY domain
PfamPF031068.6E-25344400IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAGTMATTSA DSNQTSPPFF SKIYNNNSFS ELLNGVGAEE AGYVGDGLPR FKSTPPPSLP  60
ISQPSIFSPS NYFAIPAGLS PAELLDSPVL HAHSHLLPSP TTGAFSAEQS YNWKSNSSID  120
QRHQLTKNED EDVESSIFSD FAFHPNPSTD QQQQQQQKKE EEGWTKVERP SSEYYSNQRL  180
EQNQIPVRRN NKSDDGYNWR KYGQKQVKGN ENPRSYYKCS NPNCPTKKIV EIAIDGRITE  240
IVYKGVHNHP KPVSTRKNSS SSYHPYSQNL QSSSMTLQQQ QQASENSSVS VDDESEGRLC  300
FEEPSSKRGK SEFDSGDRGV VTMNKTVREA RVVVQTTSDI DILDDGYRWR KYGQKVVKGN  360
SNPRSYYKCT SLGCLVRKQV ERSAHDASAV ITTYEGKHLH DVPVARGGGS LSNKQNPLQN  420
YGFSGYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-32194404878Probable WRKY transcription factor 4
2lex_A2e-32194404878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020271607.11e-125WRKY transcription factor WRKY24
SwissprotQ6IEQ73e-92WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A0K9PU960.0A0A0K9PU96_ZOSMR; WRKY transcription factor 4
STRINGXP_004490681.11e-111(Cicer arietinum)
STRINGGLYMA11G29720.11e-111(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.17e-87WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]