PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zosma171g00350.1 | ||||||||
Common Name | ZOSMA_171G00350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 210aa MW: 23592.9 Da PI: 9.8652 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.9 | 2.4e-10 | 25 | 71 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er+RR+riN +++ r+l+P+ K++Ka+ L ++v+ +++L Zosma171g00350.1 25 KSHREAERKRRERINAHLATFRTLVPNT-----NKMDKASLLMEVVRKMQEL 71 68*************************6.....5********9999888877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-12 | 21 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.659 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-8 | 25 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.8E-11 | 26 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.7E-6 | 28 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 2.6E-4 | 120 | 186 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MEVMMNNGLR SKPTSASTST GRITKSHREA ERKRRERINA HLATFRTLVP NTNKMDKASL 60 LMEVVRKMQE LRKYADNILQ LSPNGWMNEV LPGEVDQVGI DEIMNEEEED SNPDSLRRRG 120 LKVSFCCEDR PGLMSEVQQA IKRSVNARAV RADMATVGGR TKSVVVLEGE VEGKERSILH 180 SSLKEVVHKN NSPFGINNRF SMGISFSYQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 30 | 35 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PUL9 | 1e-152 | A0A0K9PUL9_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily | ||||
STRING | MLOC_2366.1 | 1e-42 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4114 | 35 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56770.1 | 9e-28 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Zosma171g00350.1 |