PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma16g00330.1 | ||||||||
Common Name | ZOSMA_16G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 36642.4 Da PI: 4.7349 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.5 | 1.6e-10 | 154 | 197 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y k+L Zosma16g00330.1 154 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYTKEL 197 589*********************66......**************8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.072 | 148 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-14 | 151 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.2E-8 | 154 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.6E-11 | 154 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.30E-4 | 155 | 209 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 6.4E-15 | 155 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00144 | 256 | 284 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MELDENGFLE ELLGIRRDSW ENFPSSMADL FPSDCFEDAT NNAEPSSIRL PPPLQPTANV 60 IPNLGSAASQ EMVYSSCLFG NGFDGGVAGV EDVCLDGVIC KVEAGVHQTH QHQHQPVPQG 120 AGFEILSSSS TSSCCAERKM RMMRKVEGQP SKNLMAERRR RKRLNDRLSM LRSVVPKISK 180 MDRTSILGDT IDYTKELLEK IKVLQEEIEA TSSITTTTTS DDPRPQRENT FKELNPNGML 240 ARNTPQFDVE RREVDTRVEI CCAGKPGLLL STVSTLEALG LEIQQCVVSC FNEFGMQASC 300 SEEMEQRTVI STDEIKQNLF RNAGYGGRCM * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 156 | 163 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010935191.1 | 1e-108 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 1e-75 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | A0A0K9PSX9 | 0.0 | A0A0K9PSX9_ZOSMR; Transcription factor bHLH61 | ||||
STRING | XP_008806159.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1302 | 37 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 8e-76 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Zosma16g00330.1 |
Publications ? help Back to Top | |||
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