PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma16g00020.1 | ||||||||
Common Name | ZOSMA_16G00020 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GeBP | ||||||||
Protein Properties | Length: 281aa MW: 31251.2 Da PI: 5.054 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 105.6 | 3.9e-33 | 70 | 174 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk....aksgke..psfskehdq 86 lfqrlw+++Dei++L G+++f++++g+ ++++ d+ fye +++++++++sksqlveK+rrLKkKf+++++k +gke ++f+++hd+ Zosma16g00020.1 70 LFQRLWTDDDEILILEGFLEFTSQRGTtgHAHQhDTGPFYERIRSQVELDFSKSQLVEKLRRLKKKFRTNMAKmssgNGTGKEafFAFKSAHDR 163 79************************98755556***************************************6655233444226799***** PP DUF573 87 kifelskkiWg 97 k++e+s+kiWg Zosma16g00020.1 164 KAYEISEKIWG 174 **********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.4E-30 | 71 | 174 | IPR007592 | Protein of unknown function DUF573 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MPFPEPDLPT SPVTDPTIID SHAIFGEDEE DTDADGESDE VQGDHHMRAT PISIVSPAPI 60 SPPVPDPRRL FQRLWTDDDE ILILEGFLEF TSQRGTTGHA HQHDTGPFYE RIRSQVELDF 120 SKSQLVEKLR RLKKKFRTNM AKMSSGNGTG KEAFFAFKSA HDRKAYEISE KIWGGGLDSR 180 KCDDGIGDGG KIRKRGRKSG EVGLEVKVEE TATTSSAVLA VAAASEILKM DLPMVEDCVG 240 AGLSERWRQQ QILELEVYSK RLELIQEEIK DTLVKLRSGR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009402491.1 | 7e-50 | PREDICTED: probable transcription factor At5g28040 | ||||
Refseq | XP_020271749.1 | 5e-49 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A0K9PSJ0 | 0.0 | A0A0K9PSJ0_ZOSMR; DNA-binding storekeeper protein-related transcriptional regulator |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 8e-36 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Zosma16g00020.1 |