PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma169g00460.1
Common NameZOSMA_169G00460
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 329aa    MW: 36327.8 Da    PI: 7.5458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma169g00460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.95.1e-16251276126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ + +tGtC+yGdrC+FaHg
  Zosma169g00460.1 251 FKTELCNKWEETGTCPYGDRCQFAHG 276
                       79***********************8 PP
2zf-CCCH19.32.1e-06289313125
                       --S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                       ykte Cr  +++  C+yG rC+F H
  Zosma169g00460.1 289 YKTEVCRMVLAGEACPYGHRCHFRH 313
                       9**********66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.4E-18248281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-10249282IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-10250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.004250278IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-13251276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-11283313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-8285314IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-5288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MQQMQQQQEK DSINTSKSSP AIQSGDKHVN LYASIFSSPI DSSVTPPPGL ASQPPTPSSS  60
PGRNNRRENG TEISSSDRRV YLAHLMIQYR AMEDKYGLCF SHLQDAVEEV NTLRQEISRL  120
RKANTELSNQ LIPFTPAKTL LSPLSLLNDI HRLSINDFDS VSIPTNHPRY DQQQHMNIPL  180
LQQMNMISLP KSISVRSSGY GNTTSADSTR SNISGSTTFA GSQRVRVPAV GGNMVGEEEG  240
LELDAYGQGM FKTELCNKWE ETGTCPYGDR CQFAHGIGEL GPVIRHPRYK TEVCRMVLAG  300
EACPYGHRCH FRHALVPNDR CYLGAPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A4e-22251313466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6L5G12e-68C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9PTH50.0A0A0K9PTH5_ZOSMR; Zinc finger CCCH domain-containing protein 39
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-58C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]