PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma166g00650.1 | ||||||||
Common Name | ZOSMA_166G00650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | AP2 | ||||||||
Protein Properties | Length: 739aa MW: 80627.6 Da PI: 6.5796 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.9 | 3.9e-11 | 313 | 369 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g Zosma166g00650.1 313 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 369 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.6 | 8.6e-15 | 412 | 463 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Zosma166g00650.1 412 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 463 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.63E-20 | 313 | 379 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-14 | 313 | 379 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-8 | 313 | 369 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 314 | 377 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-12 | 314 | 378 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-22 | 314 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 315 | 326 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-17 | 412 | 473 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 412 | 463 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.83E-25 | 412 | 473 | No hit | No description |
PROSITE profile | PS51032 | 19.045 | 413 | 471 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-18 | 413 | 472 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 413 | 477 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-6 | 453 | 473 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 739 aa Download sequence Send to blast |
MASMNNWLGF SLSPQQEHPS TQQPSNTLPT TSVSRLIDDV SVVADCYGLA ADGSSPSLNI 60 PSNSFGILDA YNHHTHHHHS QDWTKGLDFK GGSSELSMLV GSSSINNNNN NSNSNNMDTE 120 EPKLEDFLGG NSFSDHEHHQ KMNSIAGHGF VDNSDDYMFS NCSLQLPPAP VPSNGGGTMD 180 AVNNHQNGSN SSIGLSMIKT WLRNQPAPTQ QEQQQQQYVG KNGDLVSAVG APVQNNVQSL 240 SLSMSTGSQL SSPLPLLASD GRGESSSSVD NKQKGGGGSS TSAPLDVQSG GGAPSAVEAV 300 PRKSIDTFGQ RTSIYRGVTR HRWTGRYEAH LWDNSCRREG QTRKGRQGGY DKEEKAARAY 360 DLAALKYWGS TTTTNFPISN YETELEEMKH KTRQEYVASL RRKSSGFSRG ASIYRGVTRH 420 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVNSI 480 LESSTLPIGG TAKRMKEVSE HAEASVDARR TDHEDITVSY LTDGICSNYR SHQHFGWPAA 540 VAYQQNQQLG LHYPYVQQQP QQQQRGWCKQ EQDPVTAAVH GYQDLHLGNN THNFFHPPGL 600 HNLMGMDSTS SMDHSSDSNF VLYNGGGSSN HGYMMPMSLV GDHGQQGSTN NNYGDQHDHN 660 NNNTNSMLVS STDLYSNGRN NNSNNVYYLS QQSPGDSLKT NGYDHHNWAP TTTPVPGITP 720 NGANTIAGAP VFSVWNDA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008804192.2 | 0.0 | AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | A0A0K9PVT8 | 0.0 | A0A0K9PVT8_ZOSMR; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_008804192.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1569 | 37 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20840.1 | 1e-120 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma166g00650.1 |