PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma166g00570.1

Common Name

ZOSMA_166G00570

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Trihelix

Protein Properties

Length: 543aa MW: 61337 Da PI: 7.031

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma166g00570.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	71.9	1.2e-22	119	239	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnk 59 +Wt+++v++Li ++ +++++ +++ +kk++W++vsk+m+erg +sp+qC++k+++lnk Zosma166g00570.1 119 KWTDEMVRLLIMVVYYVGDEAGTDHpsssgeatasgtktttsnkknngggphhmqstqqQKKGKWKSVSKAMMERGHCVSPQQCEDKFNDLNK 211 7************99998888755667778888888888999999999999999999****************************** PP trihelix 60 rykkikegekkr.tsessstcpyfdqle 86 ryk+++++ +++ +++++++ +++d ++ Zosma166g00570.1 212 RYKRVNDILGRGtACKVVENQKLLDTMD 239 ********55*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-19	117	265	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MEGGSGVQPN LPSGMMRLEM QQIQHHQQQQ RQRQQQQQQQ FLPFSSSQQQ QQQQQQTHHE 60 STAQKHYAMT TNKIQPKQLQ QSLPPQPPYQ QQQLSPDEHT GHLPVASPAS SASPWQRMKW 120 TDEMVRLLIM VVYYVGDEAG TDHPSSSGEA TASGTKTTTS NKKNNGGGPH HMQSTQQQKK 180 GKWKSVSKAM MERGHCVSPQ QCEDKFNDLN KRYKRVNDIL GRGTACKVVE NQKLLDTMDK 240 LSPKSKEEAR KLLNSKHLFF REMCAYHSTC AANTATGQIA GIPGVGGSVM PTHHQSCEFG 300 PVPQFAHPQP STTVMKRATG GYGEDEHHQR DMIMEDEEDE EEEEEEDYDD EEEEDEDGGL 360 QSRRPSHGLE VNGEEEHESK TGFAAATTTF SGTKRQRRSC SPSQTPPSSH QLRSELMSLS 420 GPAEQQRQWV QQRAVELEER KVGYQRRALD LEKQRFKWQR YSRNKEREME KRKLSNDRLH 480 LESERMLLLL RQKELDIFNY KCNGSGNYAA ASATAPAPAV AEQQPQAQPQ HGGVAPTATF 540 IV*

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MEGGSGVQPN LPSGMMRLEM QQIQHHQQQQ RQRQQQQQQQ FLPFSSSQQQ QQQQQQTHHE  60
STAQKHYAMT TNKIQPKQLQ QSLPPQPPYQ QQQLSPDEHT GHLPVASPAS SASPWQRMKW  120
TDEMVRLLIM VVYYVGDEAG TDHPSSSGEA TASGTKTTTS NKKNNGGGPH HMQSTQQQKK  180
GKWKSVSKAM MERGHCVSPQ QCEDKFNDLN KRYKRVNDIL GRGTACKVVE NQKLLDTMDK  240
LSPKSKEEAR KLLNSKHLFF REMCAYHSTC AANTATGQIA GIPGVGGSVM PTHHQSCEFG  300
PVPQFAHPQP STTVMKRATG GYGEDEHHQR DMIMEDEEDE EEEEEEDYDD EEEEDEDGGL  360
QSRRPSHGLE VNGEEEHESK TGFAAATTTF SGTKRQRRSC SPSQTPPSSH QLRSELMSLS  420
GPAEQQRQWV QQRAVELEER KVGYQRRALD LEKQRFKWQR YSRNKEREME KRKLSNDRLH  480
LESERMLLLL RQKELDIFNY KCNGSGNYAA ASATAPAPAV AEQQPQAQPQ HGGVAPTATF  540
IV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PVS6	0.0	A0A0K9PVS6_ZOSMR; Sequence-specific DNA binding transcription factor

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-57	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Zosma166g00570.1