PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma166g00220.1 | ||||||||
Common Name | ZOSMA_166G00220 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 28297.7 Da PI: 7.8919 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96.2 | 2.2e-30 | 21 | 109 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae+h + e++ l +ede g+sW+++++y+ +s++yvltkGW+++vk+++L++gD+v+F Zosma166g00220.1 21 FEKLLTPSDVGKLNRLVIPKQHAERHfpldaeS--GEKGLLLNFEDEGGKSWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGDVVLFDKR 109 99**************************99643..457789***********************************************932 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.3E-38 | 16 | 110 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.88E-28 | 18 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.73E-26 | 19 | 106 | No hit | No description |
PROSITE profile | PS50863 | 13.465 | 21 | 125 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-27 | 21 | 108 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.6E-20 | 21 | 118 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MENAMAGEDT RWGNWEREHL FEKLLTPSDV GKLNRLVIPK QHAERHFPLD AESGEKGLLL 60 NFEDEGGKSW RFRYSYWTSS QSYVLTKGWS RYVKEKQLDA GDVVLFDKRK RRRGDRSDFD 120 GYGDGDGDRL YIGWKRREIQ IPNAEHVVMW NTTLYGVDPL LQNYQHHHHH PRRLLPPSTP 180 VAGTMRRESQ FYAIEEQRGS SIHQSTTSTW KKQLRLFGVN LECEMSSATV DDPRELQLLP 240 HS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-51 | 16 | 137 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-51 | 16 | 137 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 112 | KRKRRR |
2 | 108 | 112 | RKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020246232.1 | 1e-62 | LOW QUALITY PROTEIN: B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | O82799 | 6e-55 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A0K9PVQ3 | 1e-180 | A0A0K9PVQ3_ZOSMR; B3 domain-containing transcription factor NGA1 | ||||
STRING | VIT_08s0007g02810.t01 | 3e-59 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 5e-51 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma166g00220.1 |