PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma162g00710.1 | ||||||||
Common Name | ZOSMA_162G00710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 24681.1 Da PI: 4.9459 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 137 | 181 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+++E+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Zosma162g00710.1 137 AWSEDEHRLFLLGLDKYGKGDWRSISRNFVVSRTPTQVASHAQKY 181 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.121 | 27 | 81 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.3E-4 | 31 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.3E-9 | 33 | 84 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.24E-4 | 34 | 77 | No hit | No description |
PROSITE profile | PS51294 | 16.361 | 130 | 186 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-16 | 130 | 187 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-9 | 134 | 184 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.5E-17 | 134 | 184 | IPR006447 | Myb domain, plants |
CDD | cd00167 | 1.04E-8 | 137 | 182 | No hit | No description |
Pfam | PF00249 | 1.7E-10 | 137 | 181 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 137 | 180 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MREISDTLPA SPSRDLSSAV EDFGMEEATN SGSTWTWEQE KAFENALAVY AEESSNRWVC 60 VAADVDGKTE EEVRRHFEIL IEDIDGIESG RVPLPSYVSS SEGSAEDIGG NKGKKSSSNA 120 TGKKLPRTYQ ERRKGIAWSE DEHRLFLLGL DKYGKGDWRS ISRNFVVSRT PTQVASHAQK 180 YFIRLNSMNK ERRRSSIHDI TTPAGVDKDG DDVTATAATT EQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-20 | 25 | 97 | 1 | 73 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009418273.1 | 4e-85 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 5e-73 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A0K9PWD0 | 1e-162 | A0A0K9PWD0_ZOSMR; Myb family transcription factor | ||||
STRING | XP_010279472.1 | 4e-83 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-75 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma162g00710.1 |
Publications ? help Back to Top | |||
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