PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma160g00120.1
Common NameZOSMA_160G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 305aa    MW: 34324.9 Da    PI: 7.1394
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma160g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151360148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W+++Ede+l + ++ +G g+W+++++  g+ R++k+c++rw++yl
  Zosma160g00120.1 13 KGLWSPDEDEKLFNHINIFGIGCWSSVPKQAGLQRCGKSCRLRWLNYL 60
                      678*******************************************97 PP
2Myb_DNA-binding44.82.9e-1466110147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++++eE++l+v  ++ lG++ W+ Ia  +  gRt++++k++w++ 
  Zosma160g00120.1  66 RGSFSQEEEDLIVGFHQVLGNR-WSQIAGQLE-GRTDNEIKNYWNST 110
                       899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575135No hitNo description
Gene3DG3DSA:1.10.10.601.4E-23663IPR009057Homeodomain-like
PROSITE profilePS5129415.72860IPR017930Myb domain
SuperFamilySSF466894.4E-2811107IPR009057Homeodomain-like
SMARTSM007179.5E-121262IPR001005SANT/Myb domain
PfamPF002492.6E-131360IPR001005SANT/Myb domain
CDDcd001676.56E-101660No hitNo description
PROSITE profilePS5129423.40161115IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-2464115IPR009057Homeodomain-like
SMARTSM007171.8E-1265113IPR001005SANT/Myb domain
PfamPF002493.2E-1266110IPR001005SANT/Myb domain
CDDcd001678.02E-868111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MVRTFSNKHK LKKGLWSPDE DEKLFNHINI FGIGCWSSVP KQAGLQRCGK SCRLRWLNYL  60
RPDVKRGSFS QEEEDLIVGF HQVLGNRWSQ IAGQLEGRTD NEIKNYWNST LKKKLLKQGI  120
DPNTHKPLMI KSTNNVVKLD QEHKSPKISF KPHEPMKSST PNKESSFGNH LMVNYEGGIS  180
CNFLNNVSSS STTTSVSTPP YVDIVLDVWN CYNKESEVEP SKMDCNEAKE NVVIEEKGGV  240
GGRKGLIWGL EGKNEKKIEG ESSSLVEFDI GGFPIPSLPL FPLGFDFEFD DFNCLQTLDE  300
FSKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-281111525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248622.16e-72PREDICTED: myb-related protein Hv33-like
TrEMBLA0A0K9PUE00.0A0A0K9PUE0_ZOSMR; Myb domain protein 68
STRINGXP_010248622.12e-71(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.14e-66myb domain protein 86