PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma160g00050.1
Common NameZOSMA_160G00050
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 369aa    MW: 40579.6 Da    PI: 6.8347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma160g00050.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-191562148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WTteEd++lv +vk++G g+W+ I++  g++R+ k+c++rw +yl
  Zosma160g00050.1 15 KGPWTTEEDDKLVSCVKKHGHGNWREIPKLGGLNRCSKSCRLRWTNYL 62
                      79********************************************97 PP
2Myb_DNA-binding47.25.1e-1568136147
                       TSSS-HHHHHHHHHHHHHTTTT.......................-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.......................tWktIartmgkgRtlkqcksrwqky 47 
                       rg+++ eE++ ++d++  lG++                       +W+tIa+++  gRt++++k++w+++
  Zosma160g00050.1  68 RGKFSDEEEQTIIDLHSVLGNKsvswlislfiyssvrfvmfwrtcRWSTIASRLS-GRTDNEIKNYWNTH 136
                       89*****************************************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-25765IPR009057Homeodomain-like
PROSITE profilePS5129425.5821066IPR017930Myb domain
SMARTSM007179.8E-161464IPR001005SANT/Myb domain
PfamPF002492.8E-171562IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-241689IPR009057Homeodomain-like
CDDcd001674.57E-131762No hitNo description
Gene3DG3DSA:1.10.10.606.3E-2366142IPR009057Homeodomain-like
PROSITE profilePS5129411.41767141IPR017930Myb domain
SMARTSM007173.2E-1067139IPR001005SANT/Myb domain
PfamPF002497.0E-1268136IPR001005SANT/Myb domain
CDDcd001671.04E-770137No hitNo description
SuperFamilySSF466893.8E-7106147IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGRSPCCYDQ ASLKKGPWTT EEDDKLVSCV KKHGHGNWRE IPKLGGLNRC SKSCRLRWTN  60
YLRPDIKRGK FSDEEEQTII DLHSVLGNKS VSWLISLFIY SSVRFVMFWR TCRWSTIASR  120
LSGRTDNEIK NYWNTHIRKK LIHMGIDPVT HQPRPNVSLI SNLPNLLAMA ATAGRNMAAP  180
PLNGDAAQLA THQLVQTLVQ VLAGSSSSPA MMGPDVRLFP LNNHDNMSNY LQPWSSSTQD  240
PNLYCGFSIG GVGGSSGGGG EVVPSGHVED GLLSNVFNVE TNTNINNSIA TTNYSSSTVT  300
TTATNLVSNS PEENLAVDQN QINEFGSTIC TPTPTISDSS RGVLDIDDLT CEHYWKEFLD  360
QTTWPSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25131415108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9S9Z22e-71MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A0K9PUH60.0A0A0K9PUH6_ZOSMR; Myb domain protein 9
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.26e-75myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]