PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma15g01420.1 | ||||||||
Common Name | ZOSMA_15G01420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HSF | ||||||||
Protein Properties | Length: 59aa MW: 6654.49 Da PI: 5.544 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 24.7 | 6.2e-08 | 1 | 43 | 9 | 50 |
HHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--H CS HSF_DNA-bind 9 iledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnf 50 +++d +++++sws + nsf+v+ + ef + +L k+F+h+++ Zosma15g01420.1 1 MIDDVLTDDTVSWSpGSDNSFIVWSPVEFCSVLLFKHFRHNSL 43 67788899******8677**********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.4E-7 | 1 | 43 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.39E-5 | 1 | 43 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.4E-5 | 2 | 43 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
MIDDVLTDDT VSWSPGSDNS FIVWSPVEFC SVLLFKHFRH NSLRTSDNSI LTKVDPKR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PUU0 | 8e-34 | A0A0K9PUU0_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 3e-13 | heat shock factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Zosma15g01420.1 |