PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma159g00500.1 | ||||||||
Common Name | ZOSMA_159G00500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | TALE | ||||||||
Protein Properties | Length: 372aa MW: 42324 Da PI: 8.6364 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 26.7 | 9.2e-09 | 314 | 351 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ L++++gLt +q+++WF N R + Zosma159g00500.1 314 FEHflHPYPNDNEKLMLSSQTGLTRNQISNWFINARVR 351 554458******************************88 PP | |||||||
2 | BELL | 61.8 | 1.6e-20 | 183 | 251 | 3 | 71 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 e q++++kL++l +e++++Y++y ++ vi Fe vag ++ak Y++l ka+ hF L++ai q Zosma159g00500.1 183 SERQIRITKLITLSKELERQYEKYLYSMNGVITKFELVAGTDAAKCYINLTIKAMCLHFLKLREAILVQ 251 689***************************************************************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.9E-8 | 118 | 250 | IPR006563 | POX domain |
Pfam | PF07526 | 2.1E-25 | 125 | 248 | IPR006563 | POX domain |
SMART | SM00389 | 8.5E-8 | 295 | 359 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-26 | 300 | 361 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.78E-16 | 301 | 362 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.1E-17 | 312 | 351 | IPR008422 | Homeobox KN domain |
CDD | cd00086 | 4.35E-9 | 313 | 356 | No hit | No description |
PROSITE profile | PS50071 | 11.337 | 314 | 355 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MVNSEEVGIA FNWIQRNTFP SIDSGCFPAN FESHPPQPQT PWVLLSEEQE QGNGISERVA 60 IDHLIQSNKE NERQRRLGLN LNSNFSSDSL NYKYSNPSPS HSPSQIPISS PPPSHLKTLD 120 LDCFKNSRYL RPAQQLLNEV VCVSDVGSEG NLFSKNASFL GQITDADIWL KCSSPSTNYK 180 DSSERQIRIT KLITLSKELE RQYEKYLYSM NGVITKFELV AGTDAAKCYI NLTIKAMCLH 240 FLKLREAILV QFKKASKSSS PGRIPELSKS CKNVSSQTTS GRNQNLGMIP LRQVWRPLRG 300 LPEKSVVVLR TWLFEHFLHP YPNDNEKLML SSQTGLTRNQ ISNWFINARV RLWKPMIEDM 360 YREEFVDDSN T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 2e-14 | 301 | 362 | 5 | 66 | Homeobox protein Meis2 |
3k2a_B | 2e-14 | 301 | 362 | 5 | 66 | Homeobox protein Meis2 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010932651.1 | 4e-79 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_010932659.1 | 4e-79 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_019705289.1 | 4e-79 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_019705292.1 | 4e-79 | BEL1-like homeodomain protein 11 | ||||
Refseq | XP_029123254.1 | 4e-79 | BEL1-like homeodomain protein 11 | ||||
TrEMBL | A0A0K9PV53 | 0.0 | A0A0K9PV53_ZOSMR; BEL1-like homeodomain protein 11 | ||||
STRING | XP_008794021.1 | 4e-77 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75430.1 | 6e-64 | BEL1-like homeodomain 11 |
Link Out ? help Back to Top | |
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Phytozome | Zosma159g00500.1 |