PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma159g00490.1
Common NameZOSMA_159G00490
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TALE
Protein Properties Length: 497aa    MW: 55668.3 Da    PI: 7.3424
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma159g00490.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-093153521954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Zosma159g00490.1 315 FEHflHPYPKDSDKSMLARQTGLTRNQVSNWFINARVR 352
                       665559******************************88 PP
2BELL113.21.4e-36173244172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       er++lq+k++kLl +l+eVd rYkqy++q+q+v+ sFe +ag  +akpYt lAl++iSrhFrcL+dai +qi
  Zosma159g00490.1 173 EREDLQNKISKLLAMLDEVDGRYKQYHNQMQIVVLSFESIAGSKTAKPYTLLALQTISRHFRCLRDAINDQI 244
                       789*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.1E-45117242IPR006563POX domain
PfamPF075262.0E-43122240IPR006563POX domain
PROSITE profilePS5007112.228293356IPR001356Homeobox domain
SMARTSM003893.6E-9296360IPR001356Homeobox domain
CDDcd000862.37E-11296357No hitNo description
SuperFamilySSF466894.71E-17298363IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28299362IPR009057Homeodomain-like
PfamPF059204.4E-18313352IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MLRPREKKSQ VSIMATYYPK TTSPKNYPTT LLYTNSSTSS SSATHLPNTT MMSYLNYASP  60
SNSVLEEASI DDLSAPSSMI LSGSPMVDGL GSPLLQQSSR QGLSLSLSTQ QRKIQPSSPA  120
TVINSRYLKV AQQLLDEVVN VRASLKNKSD NNQTPPPRED DGSKSIKEAS SIEREDLQNK  180
ISKLLAMLDE VDGRYKQYHN QMQIVVLSFE SIAGSKTAKP YTLLALQTIS RHFRCLRDAI  240
NDQIQAARRN LGEQEGSTVV AGGGISRLRY IDQNLRHQQQ RSSEQMSMLQ MQQHMWRPQR  300
GLPENSVSIL RAWLFEHFLH PYPKDSDKSM LARQTGLTRN QVSNWFINAR VRLWKPMVEE  360
MYREETSNGE LDSNLNSNTN FSSENVAKKI KTIDKSQPVQ FNNKCKGKDN DSLQVGLQDT  420
DAIVQADCTT TGGGGDVSLT LGLQHREGEL PSTLSDGNDF HRFMMENDES ADYGYIDIPD  480
NRSRFEPSQL LHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16302363566Homeobox protein Meis2
3k2a_B3e-16302363566Homeobox protein Meis2
4xrm_A3e-16302360563Homeobox protein Meis2
4xrm_B3e-16302360563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812787.11e-126BEL1-like homeodomain protein 7
RefseqXP_008812790.11e-126BEL1-like homeodomain protein 7
RefseqXP_026655966.11e-126BEL1-like homeodomain protein 7
RefseqXP_026655967.11e-126BEL1-like homeodomain protein 7
TrEMBLA0A0K9PXC20.0A0A0K9PXC2_ZOSMR; BEL1-like homeodomain 7
STRINGGSMUA_Achr9P21580_0011e-129(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90138131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-107BEL1-like homeodomain 7