PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma158g00330.1 | ||||||||
Common Name | ZOSMA_158G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 211aa MW: 22932.9 Da PI: 9.0775 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00045 | 65 | 87 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ Cgk F + L H +H Zosma158g00330.1 65 YKCSVCGKAFGSYQALGGHKASH 87 9*********9999998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.16E-9 | 65 | 137 | No hit | No description |
Pfam | PF13912 | 5.6E-13 | 65 | 89 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.6E-4 | 65 | 87 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.97 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.5E-13 | 114 | 139 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 115 | 137 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.075 | 115 | 137 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 117 | 137 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MISVNSSSKT KKRSRRTSTT PEEDYLALCL VMLAEEGGND EKREPLTLSY PTPIRSLPLP 60 DTLSYKCSVC GKAFGSYQAL GGHKASHRKS TKVVSAIVKP DGVIDLTTEK KQRVHRCSIC 120 SKTFSSGQAL GGHKRCHYDG GSCSNNNNNS SMTSVSVSGT TSSSTHRGFD LNLPPLPEFT 180 FDGVQRWSAL VEEDEVQSPL PLKKTHLFLH * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399109.1 | 5e-53 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | A0A0K9PV86 | 1e-154 | A0A0K9PV86_ZOSMR; Zinc-finger protein | ||||
STRING | GSMUA_Achr5P01720_001 | 2e-52 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3412 | 32 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04340.1 | 1e-38 | zinc finger of Arabidopsis thaliana 6 |
Link Out ? help Back to Top | |
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Phytozome | Zosma158g00330.1 |