PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma156g00330.1 | ||||||||
Common Name | ZOSMA_156G00330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 51651.1 Da PI: 8.1774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 47 | 72 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++f +tGtC yGdrC+F+H+ Zosma156g00330.1 47 PGEPDCSYFIKTGTCGYGDRCRFNHP 72 5789*********************8 PP | |||||||
2 | zf-CCCH | 40.7 | 4e-13 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC++f+rtGtCk+G++Ck++H++ Zosma156g00330.1 94 QPLCQYFMRTGTCKFGSTCKYHHPK 118 79*********************96 PP | |||||||
3 | zf-CCCH | 33.1 | 9.7e-11 | 143 | 168 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C+++ ++G+Ck+G +CkF+H++ Zosma156g00330.1 143 GEQECSYYIKSGQCKFGVTCKFNHPQ 168 6789********************97 PP | |||||||
4 | zf-CCCH | 34.4 | 3.7e-11 | 301 | 327 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f++rtG Ck+G +C+++H+p Zosma156g00330.1 301 PGQPECQFYMRTGDCKFGQTCRYHHPP 327 5789*********************97 PP | |||||||
5 | zf-CCCH | 33.5 | 7.2e-11 | 350 | 373 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+a+ G+Ck+G++CkF+H++ Zosma156g00330.1 350 PSCIFYAQHGICKFGPTCKFNHPM 373 67********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.652 | 46 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-6 | 46 | 73 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-8 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-6 | 51 | 73 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-5 | 52 | 72 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.873 | 91 | 119 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.3E-7 | 91 | 118 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.49E-6 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-10 | 94 | 118 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 96 | 117 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.723 | 141 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0018 | 141 | 168 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 143 | 168 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.02E-5 | 144 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-4 | 147 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.3E-5 | 300 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.751 | 300 | 328 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-8 | 302 | 327 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 304 | 327 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.817 | 346 | 374 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-5 | 346 | 373 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-8 | 350 | 373 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 350 | 376 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 352 | 378 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence Send to blast |
MEQQHQYQYQ QKQMYSRNLD PQTGLEESMW QLRLAGSGVG PDYPERPGEP DCSYFIKTGT 60 CGYGDRCRFN HPHSLAAVTG VTRSVGEFPE RIGQPLCQYF MRTGTCKFGS TCKYHHPKQG 120 GLVTLNVHGY PLRPIHPCWQ TQGEQECSYY IKSGQCKFGV TCKFNHPQPA GASVPQPAPT 180 FYPTAQSSPI HSPHPYSTIV NWPVATRPQL LPGPSYMQTN YGHMIMSPGF VPVSGWNPYP 240 GPVSSVVSPG GQTVQAGSIY GSLPQQLSAS APAYHSPYPL VSTLAGPSSS SQKEQNFPEN 300 PGQPECQFYM RTGDCKFGQT CRYHHPPEWS IPKTTCALSP IGLPLRPGAP SCIFYAQHGI 360 CKFGPTCKFN HPMEVLRNVS SETHIAPPHT LGMAMPILPP SPSSSALRPE FFVSSSNQEA 420 FSSIIPLNGT SSASVGSIFS TAKSPSQSSP TVSAQNSDSL SSISNTMGQG GVLSCSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010921758.1 | 1e-173 | zinc finger CCCH domain-containing protein 6 | ||||
Swissprot | Q84W91 | 1e-131 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | A0A0K9PVF3 | 0.0 | A0A0K9PVF3_ZOSMR; Zinc finger CCCH domain-containing protein 32 | ||||
STRING | XP_008796231.1 | 1e-169 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2761 | 38 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 1e-128 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma156g00330.1 |