PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma154g00390.1
Common NameZOSMA_154G00390
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 581aa    MW: 65247.9 Da    PI: 7.5725
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma154g00390.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-1863109148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g WT+eEde l +av+ + g++Wk+Ia+ ++  R++ qc +rwqk+l
  Zosma154g00390.1  63 KGGWTPEEDETLRHAVQTHKGRSWKKIAEFFP-DRSEVQCLHRWQKVL 109
                       688*****************************.************986 PP
2Myb_DNA-binding61.51.7e-19115161148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       +g+WT +Ed++++++++++G++ W+tIar ++ gR +kqc++rw+++l
  Zosma154g00390.1 115 KGPWTSQEDDKIIELIAKHGPKKWSTIARSLP-GRIGKQCRERWHNHL 161
                       79******************************.*************97 PP
3Myb_DNA-binding55.41.5e-17167210146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +++WT +E++ l da+ ++G++ W+ Ia++++ gRt++++k++w++
  Zosma154g00390.1 167 KDAWTLDEELTLMDAHVRYGNK-WAEIAKYLP-GRTDNSIKNHWNS 210
                       679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.27158109IPR017930Myb domain
SuperFamilySSF466893.01E-1660119IPR009057Homeodomain-like
SMARTSM007173.8E-1562111IPR001005SANT/Myb domain
PfamPF002491.5E-1663109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2265117IPR009057Homeodomain-like
CDDcd001672.60E-1366109No hitNo description
PROSITE profilePS5129431.269110165IPR017930Myb domain
SuperFamilySSF466894.87E-31112208IPR009057Homeodomain-like
SMARTSM007171.0E-17114163IPR001005SANT/Myb domain
PfamPF002491.0E-17115161IPR001005SANT/Myb domain
CDDcd001674.16E-15117161No hitNo description
Gene3DG3DSA:1.10.10.603.2E-26118164IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.3E-23165216IPR009057Homeodomain-like
PROSITE profilePS5129421.771166216IPR017930Myb domain
SMARTSM007173.8E-15166214IPR001005SANT/Myb domain
PfamPF002497.9E-16167210IPR001005SANT/Myb domain
CDDcd001673.32E-11169212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSVTEKHLTC VENRQLLAVA SSSEEGSYDD FPCQKSKIVG SGSPVRSSPS NNRRATGPIR  60
RAKGGWTPEE DETLRHAVQT HKGRSWKKIA EFFPDRSEVQ CLHRWQKVLN PELIKGPWTS  120
QEDDKIIELI AKHGPKKWST IARSLPGRIG KQCRERWHNH LNPSIRKDAW TLDEELTLMD  180
AHVRYGNKWA EIAKYLPGRT DNSIKNHWNS SLKRKLDFYL ATGKLPQIPK SETRSATKDL  240
PTSTHGPLFD CSNKRSMPSD GIRSRTKYSD NYLLQTSLVP QKDPISPHCD GFISCDATDC  300
HLHQPITDTS CISYDTKSRM EECGDAINNE RYYDLMEGSH HHTFGSLYNE PPQLDIGNSH  360
IDSSLLIAHC SPSPADNSGM QAGNLSSFIN VKTSSGCSPE YILENALKYA ARSFPNTPSI  420
FLRKRKREGH ALHMSSAPVN LCEKIEMNVN TPMLPDTDLE QDMVNTVGSS CTQIKKESKG  480
NWTDLEQVGS TVRLTLNSPQ HSDEFEKNQN ASPSYSLRPT RTAVTRSIEK KLEFAMDENS  540
SRDSIKLKDD TTVNENYTEI TSCANSKNSQ NGEINELLSH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-68622165159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-68622165159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PXZ30.0A0A0K9PXZ3_ZOSMR; Myb domain protein 3r-5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.21e-111myb domain protein 3r-5