PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma154g00280.1
Common NameZOSMA_154G00280
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TALE
Protein Properties Length: 414aa    MW: 46349.1 Da    PI: 8.4818
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma154g00280.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-092713081954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +++  LAk+ gL+ +qV++WF N R +
  Zosma154g00280.1 271 FEHflHPYPTDTDKHLLAKQSGLSRNQVSNWFINARVR 308
                       665559******************************88 PP
2BELL64.13e-21161218966
              BELL   9 kakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkd 66 
                       k++L+s l+eV++r kqyv+q+q v+  Fe +agl  a+pY+slA ka+++hF  Lk+
  Zosma154g00280.1 161 KSRLVSTLDEVYRRCKQYVQQIQYVMTCFESIAGLHDAAPYASLAIKAMAKHFHRLKN 218
                       899*****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.9E-22105222IPR006563POX domain
PfamPF075262.9E-19160218IPR006563POX domain
PROSITE profilePS5007111.855249312IPR001356Homeobox domain
SMARTSM003897.9E-8252316IPR001356Homeobox domain
CDDcd000862.76E-11252312No hitNo description
Gene3DG3DSA:1.10.10.601.6E-25255316IPR009057Homeodomain-like
SuperFamilySSF466895.13E-16256319IPR009057Homeodomain-like
PfamPF059202.7E-17269308IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEGHRRRQQY HHHITTPFYH VPQQSRREKL RYPSTEIDLL HPTSTTTFIG NPNYIRCFQQ  60
PMFANQTGMS LSLSSSSQYV GTDRGSDVDE SIRIAGPSRP SEPFTGYAAV LGSSKFLGPA  120
QQILKEMCSV GDGVVVGFGC GLPGDTLDFD SGNEGSVLGV KSRLVSTLDE VYRRCKQYVQ  180
QIQYVMTCFE SIAGLHDAAP YASLAIKAMA KHFHRLKNFA VVSDNGRGGE GESLGFQALQ  240
ARTTMRQQQN LWRHQRGLPE NSVAVLKAWL FEHFLHPYPT DTDKHLLAKQ SGLSRNQVSN  300
WFINARVRLW KPLVEEIHSL EMRQGRSSQV IDTVDDPTVK RLHNKQPTGV ILKSDEFHSD  360
HHHGHTNTNT NTGISLTLGL LHQTNNSKIT VPDSLPFNVA RRFGLEEEGF NDL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019708996.22e-86LOW QUALITY PROTEIN: BEL1-like homeodomain protein 9
SwissprotQ9LZM84e-65BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A0K9PVR50.0A0A0K9PVR5_ZOSMR; Uncharacterized protein
STRINGXP_008811511.13e-83(Phoenix dactylifera)
STRINGGSMUA_Achr10P22520_0013e-83(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.12e-61TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]