PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma154g00170.1 | ||||||||
Common Name | ZOSMA_154G00170 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | Dof | ||||||||
Protein Properties | Length: 260aa MW: 28618.6 Da PI: 9.5172 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122 | 2e-38 | 44 | 103 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprC+stntkfCyynnyslsqPr+fCkaCrryWt+GGalrnvPvGgg+r+++k++ Zosma154g00170.1 44 QAPLNCPRCESTNTKFCYYNNYSLSQPRHFCKACRRYWTRGGALRNVPVGGGCRRRNKRT 103 67899***********************************************99876654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-25 | 32 | 98 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.3E-32 | 46 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.255 | 47 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 49 | 85 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MVYTSMNPPD HWNHQQQQRQ QQHQQHQQQH GDRGVVGKLK RPEQAPLNCP RCESTNTKFC 60 YYNNYSLSQP RHFCKACRRY WTRGGALRNV PVGGGCRRRN KRTSSKTISK LSTTGRGGAV 120 TNNNNSRNIN NIDVAHLTDY GGLGFQSIDL VNHNNYQIGG GGNGGIEYLQ FPQFPLFTNN 180 TSTTTTTTMA NAIGIDQLYQ FDGTTPVGFT TADGTTAENM QYWSGNINGN IAGSSNNITA 240 GYPSLPSSGW MDLAGFNLL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PXX1 | 0.0 | A0A0K9PXX1_ZOSMR; Dof zinc finger protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28810.2 | 2e-33 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma154g00170.1 |