PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma153g00120.1

Common Name

ZOSMA_153G00120

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

SRS

Protein Properties

Length: 391aa MW: 43072.6 Da PI: 8.2063

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma153g00120.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.6	1.4e-07	53	87	5	39
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv 39 + +C +CGn a+ C ++ C+ CC + C+ hv Zosma153g00120.1 53 KPKCIQCGNIARARCPFQSCKGCCVKAENPCHIHV 87 568*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.5E-5	55	87	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MASGSSPAIS EKSGISGGGF GSTASPVSSA RIITAQRSDI MDPPKQNQRG LNKPKCIQCG 60 NIARARCPFQ SCKGCCVKAE NPCHIHVLKQ PQSILPDKLA SSPASTLSEQ PSTITSSAGA 120 ALRLSSLRQL SNTFASTLRT KKPLSRKDAI NINKWRFSKL KEHIEGDIEI ENEAFDRYMQ 180 NINLLKETFI PNKTVDDDDI ILPDGTPEQS TSVEFKRNVG AIKARLQSKV EIKKSFREKI 240 QGIVDQGLKD LQRSDGIVDN EDNNDIAYDD DLCSLRDPKK KKIIGTRIDR TAAIDDLFDK 300 LSKARTEEEL NSCLGIKLRL FNQDIKKNNR STISMDEEKV EDAPEAQSSH STTATTSSAT 360 FHYFCTRLVD QDTLRNIEAQ CSSHNGIIQL *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MASGSSPAIS EKSGISGGGF GSTASPVSSA RIITAQRSDI MDPPKQNQRG LNKPKCIQCG  60
NIARARCPFQ SCKGCCVKAE NPCHIHVLKQ PQSILPDKLA SSPASTLSEQ PSTITSSAGA  120
ALRLSSLRQL SNTFASTLRT KKPLSRKDAI NINKWRFSKL KEHIEGDIEI ENEAFDRYMQ  180
NINLLKETFI PNKTVDDDDI ILPDGTPEQS TSVEFKRNVG AIKARLQSKV EIKKSFREKI  240
QGIVDQGLKD LQRSDGIVDN EDNNDIAYDD DLCSLRDPKK KKIIGTRIDR TAAIDDLFDK  300
LSKARTEEEL NSCLGIKLRL FNQDIKKNNR STISMDEEKV EDAPEAQSSH STTATTSSAT  360
FHYFCTRLVD QDTLRNIEAQ CSSHNGIIQL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9PY37	0.0	A0A0K9PY37_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7375	5	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	5e-63

Link Out ? help Back to Top
Phytozome	Zosma153g00120.1