PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g00330.1
Common NameZOSMA_14G00330
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 272aa    MW: 30647.8 Da    PI: 8.9341
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g00330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv ++++ G+g+W+ +++  g+ R+ k+c++rw +yl
  Zosma14g00330.1 14 KGPWTPEEDIILVSYIHENGPGNWRVVPSNTGLLRCSKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding45.41.9e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T  E +l++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Zosma14g00330.1  67 RGQFTDHEVKLIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.694961IPR017930Myb domain
SuperFamilySSF466894.39E-2811108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002492.0E-151461IPR001005SANT/Myb domain
CDDcd001672.84E-101661No hitNo description
PROSITE profilePS5129423.21662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-2465117IPR009057Homeodomain-like
SMARTSM007172.8E-1466114IPR001005SANT/Myb domain
PfamPF002495.3E-1367112IPR001005SANT/Myb domain
CDDcd001677.80E-1070111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGRPPCCGKI GVKKGPWTPE EDIILVSYIH ENGPGNWRVV PSNTGLLRCS KSCRLRWTNY  60
LRPGIKRGQF TDHEVKLIIH LQALLGNRWA AIASYLPERT DNDIKNYWNT HLKKKLKKLH  120
SSQGNDGFTK GQWEKKLQTD INMAKKALCD ALSIDQPNIN ALQTYLSPTH QKQKHQIIPT  180
TSSSSVYASS AENISRLLKN WVHKSPNSAP PKPESHDSIF DFESTTTEAS ESTTLFQEDL  240
KSINFQEQLP LSMLESWLLA ESNSDPVDLL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-231411658159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-231411658159MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-24141164105C-Myb DNA-Binding Domain
1msf_C4e-24141164105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014495344.21e-113myb-related protein 306
SwissprotP813921e-106MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0K9PYH10.0A0A0K9PYH1_ZOSMR; Uncharacterized protein
STRINGXP_007138187.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.15e-89myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]