PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma14g00260.1
Common NameZOSMA_14G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 332aa    MW: 37666.9 Da    PI: 6.6797
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma14g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.73.9e-52131421129
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+++yLkkk+  +k+e+ evi+evd++++ePwdL++  ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk 
  Zosma14g00260.1  13 VPPGFRFHPTDEELLHYYLKKKILFEKFEI-EVIREVDLNRLEPWDLQErcRIGSaPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC 105
                      69****************************.99**************963433332566*********************************** PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                      + + + +++g++ktLvfy+grap+g+k+dW+mheyrle
  Zosma14g00260.1 106 IRD-SFRKIGMRKTLVFYRGRAPHGQKSDWIMHEYRLE 142
                      **9.8899****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-607164IPR003441NAC domain
PROSITE profilePS5100557.53213164IPR003441NAC domain
PfamPF023651.5E-2714141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MASSSSTSAS FGVPPGFRFH PTDEELLHYY LKKKILFEKF EIEVIREVDL NRLEPWDLQE  60
RCRIGSAPQN EWYFFSHKDR KYPTGSRTNR ATNAGFWKAT GRDKCIRDSF RKIGMRKTLV  120
FYRGRAPHGQ KSDWIMHEYR LEDSEDTQPV GTEDGWVVCR VFLKKNFFKI AGASGSDEGG  180
SGGMGQGGGI EEHMGLPLMV ATTDQFRMPT QYIHSEQQEQ EQLQHYNSSI YKPPSDLGLQ  240
YTHLQSHHYP PQIQVQNLLP DHRQPGSGPN YDFSALPGEL DVSGGGHGGD ENDWTMLGRF  300
GNTTAATEVH HMNQMPNSRG EMDLWGYGKQ Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5111663170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252331.11e-121PREDICTED: protein BEARSKIN2-like
RefseqXP_020690248.11e-121protein BEARSKIN2-like
SwissprotQ9SV871e-106BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A0K9PYG60.0A0A0K9PYG6_ZOSMR; Protein BEARSKIN1
STRINGXP_010252331.11e-120(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.13e-94NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]