PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma149g00250.1
Common NameZOSMA_149G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 357aa    MW: 40108.2 Da    PI: 9.0508
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma149g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-16136181147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Zosma149g00250.1 136 RGHWRPAEDTKLRELVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 181
                       899*****************************.***********996 PP
2Myb_DNA-binding57.33.6e-18188231146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r ++T+eE+e+l  a++++G++ W++Iar ++ gRt++ +k++w+ 
  Zosma149g00250.1 188 RRAFTEEEEEKLMAAHRMYGNK-WALIARLFP-GRTDNAVKNHWHV 231
                       678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.252131182IPR017930Myb domain
SMARTSM007179.1E-14135184IPR001005SANT/Myb domain
SuperFamilySSF466894.87E-28136229IPR009057Homeodomain-like
PfamPF002498.6E-16136181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.2E-26137189IPR009057Homeodomain-like
CDDcd001672.52E-12139180No hitNo description
PROSITE profilePS5129427.392183237IPR017930Myb domain
SMARTSM007172.0E-15187235IPR001005SANT/Myb domain
PfamPF002491.6E-15188230IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-21190236IPR009057Homeodomain-like
CDDcd001678.31E-12190230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MATRCYSSSS LKRGMVEEMG SLCINPISTN SRCCYRSKSF VGKQEVEEEK EDLVRNNSNT  60
ARTVSWSFPL MGSNISVGQD DYPPRHQQKQ HEEAAAIFRR SSENTDSDSV VGVGVVGEST  120
DKKSFDECGQ SKLCARGHWR PAEDTKLREL VALYGPQNWN LIAEKLDGRS GKSCRLRWFN  180
QLDPRINRRA FTEEEEEKLM AAHRMYGNKW ALIARLFPGR TDNAVKNHWH VIMARKYREQ  240
SCARRRKFNP KSPLILSSAP PPHPPPVPAA TPANLSRPQP FDFLSGSEER SRSFYMHGLY  300
SAAATYPSLM VMSGTMQQHH QSVSLVGPSM EEDNSNPFNS PTISPSFIDF LGVGTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-331362367107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PWY00.0A0A0K9PWY0_ZOSMR; Uncharacterized protein
STRINGXP_008781016.12e-84(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-73myb domain protein 105