PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma148g00390.1 | ||||||||
Common Name | ZOSMA_148G00390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 386aa MW: 42783.4 Da PI: 9.608 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.5e-06 | 72 | 94 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H Zosma148g00390.1 72 FPCEVCGKGFQRDQNLQLHRRGH 94 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 6.37E-7 | 71 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.0E-6 | 71 | 94 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.635 | 72 | 94 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.022 | 72 | 94 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 74 | 94 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.6E-4 | 136 | 168 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 6.37E-7 | 143 | 168 | No hit | No description |
SMART | SM00355 | 220 | 148 | 168 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 386 aa Download sequence Send to blast |
MAEDDEGRKI GRGYMESRHI PTIFLQNPCL QKEETKPSPA MKKKKRNLPG TPDPTAEVIA 60 LSPKSLLATN RFPCEVCGKG FQRDQNLQLH RRGHNLPWKL RQRSSASPRK RVYVCPEKIC 120 VHHNPKRALG DLTGIKKHYC RKHGEKKWKC DRCSKRYAVA SDWKAHCKSC GTREYRCDCG 180 TLFSRRDSFI THRAFCDALA EESAKLSGTG AGTGSSNISS LTTAISSGHY PVDQRSSESV 240 HLHDLQHLGS VTAMQMFGDL SWMSGTKISS GSLPSLYSTQ INQQAETGPE PDMSATALLQ 300 KAAQIGVTSS TGVDYHATSL VDFNPNNHDI VTGSGIFPTL DQFETMYANF GDNATRREGK 360 TRDFLGVGGR QMHHVRRYPL FPPSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 5e-33 | 144 | 207 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 5e-33 | 144 | 207 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020690977.1 | 1e-124 | zinc finger protein MAGPIE-like | ||||
Swissprot | Q9FFH3 | 1e-109 | IDD8_ARATH; Zinc finger protein NUTCRACKER | ||||
TrEMBL | A0A0K9PZ45 | 0.0 | A0A0K9PZ45_ZOSMR; Zinc finger family protein | ||||
STRING | Gorai.005G198900.1 | 1e-121 | (Gossypium raimondii) | ||||
STRING | XP_008783278.1 | 1e-121 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44160.1 | 1e-112 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma148g00390.1 |
Publications ? help Back to Top | |||
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