PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma147g00040.1 | ||||||||
Common Name | ZOSMA_147G00040 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | FAR1 | ||||||||
Protein Properties | Length: 141aa MW: 15948.6 Da PI: 11.299 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 53.4 | 8.7e-17 | 17 | 106 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY YA ++GFsv+ks+++++ + t++t+vCskegk++ + +k +r + rt Ckak++ + d+ w v + HnH la Zosma147g00040.1 17 NFYYGYAGRIGFSVCKSTTSSN--AHGLTRYTLVCSKEGKSNAIIPSsntLSKIKRIPRNPRTRCKAKITFVVQ-DNIWLVPIWITSHNHLLA 106 6***************987776..5559************996433333367778888899**********999.9**************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-14 | 17 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MMIRRSMSFT TLEAAENFYY GYAGRIGFSV CKSTTSSNAH GLTRYTLVCS KEGKSNAIIP 60 SSNTLSKIKR IPRNPRTRCK AKITFVVQDN IWLVPIWITS HNHLLAKPSK RRFLPTNRKI 120 IPHTRNIIHY LEASNIAPSQ * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PX35 | 7e-99 | A0A0K9PX35_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-13 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Zosma147g00040.1 |