PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma143g00140.1
Common NameZOSMA_143G00140
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 352aa    MW: 40416.1 Da    PI: 9.6569
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma143g00140.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like66.83.8e-21179229455
           G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       ++W + LH +F+ea++++  +++A+Pk+ile m+v+gLt+e+v+SHLQk+Rl
  Zosma143g00140.1 179 VVWDSYLHGKFIEAIQSI-VPHRAVPKNILEKMNVPGLTRENVASHLQKFRL 229
                       78****************.9*******************************8 PP
2Response_reg56.31.8e-1991161109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ + ++++ ++l++ +y    e+ d  eal+ll+     +Dl+l+Di m gm+ ++ll  i +e+ +lp+++++  ++ e++++ ++
  Zosma143g00140.1   9 VLVVDDDATCLKIIGKMLRSCKY---IECIDVNEALNLLRSYLkcFDLVLTDITMTGMKDFQLLDCILQENIDLPVVMMSVDDKIETMIKSIQ 98 
                       89*****************9999...5677888999999877678**********************99999********************* PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga  +l+Kp ++e++++
  Zosma143g00140.1  99 KGAYFYLTKPLKMEQIMT 116
                       ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.25E-275122IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.9E-275139No hitNo description
SMARTSM004485.0E-177118IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011029.5568122IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.5E-179116IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.35E-2010122No hitNo description
SuperFamilySSF466893.23E-12177233IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-19177233IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-19178229IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MKSLEGLNVL VVDDDATCLK IIGKMLRSCK YIECIDVNEA LNLLRSYLKC FDLVLTDITM  60
TGMKDFQLLD CILQENIDLP VVMMSVDDKI ETMIKSIQKG AYFYLTKPLK MEQIMTLWQF  120
VMVKNYEKSI GKRDNISQNS MTPSLIDQSS RKGKHIMKTH GKQPMKENKK VLKEINPIVV  180
WDSYLHGKFI EAIQSIVPHR AVPKNILEKM NVPGLTRENV ASHLQKFRLY IKKRKEKDFY  240
RTLGGDNHGF SNPTQFVPLK TPSQMVQQIA PKMQQKMLTP TTKAINFKTY YKSWTKYQLM  300
LFNAHNNSLS SIPSNIHIES SQPVILMNRN HMNDENASEG SNQSDIDTLN D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-13177233662ARR10-B
5lxu_A1e-13177232257Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZN90.0A0A0K9PZN9_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-48response regulator 2