PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma143g00110.1
Common NameZOSMA_143G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 342aa    MW: 38858.8 Da    PI: 6.2881
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma143g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like73.92.2e-23173226155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kp ++W + LH++F+ea++ + G+++A+Pk+ile m+v+gLt+e+v+SHLQk+Rl
  Zosma143g00110.1 173 KPMVVWDSYLHDKFIEAIQII-GPHRAVPKHILEEMNVPGLTRENVASHLQKFRL 226
                       67799****************.********************************8 PP
2Response_reg73.21.1e-2491131106
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vdD+ + ++++ ++l++ +y    e+ d+ eal+ll+ +   +Dl+l+Diempgm+G++ll+ i +e+ ++p+++++  ++ e++++ ++
  Zosma143g00110.1   9 VLVVDDDATCLQIIGTMLRSCKY---IECIDANEALNLLRSHLncFDLVLTDIEMPGMNGFQLLECILQENTDTPVVMMSVDDKIETMIKSIQ 98 
                       89*****************9888...678899*******988889**********************99999********************* PP

                       TTESEEEESS--HHH CS
      Response_reg  92 aGakdflsKpfdpee 106
                        Ga  +l+Kp ++e 
  Zosma143g00110.1  99 KGAYFYLTKPLKMEL 113
                       **********87764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.6E-325146No hitNo description
SuperFamilySSF521722.85E-315122IPR011006CheY-like superfamily
SMARTSM004489.2E-267117IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011033.588122IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.5E-229115IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.00E-2510112No hitNo description
Gene3DG3DSA:1.10.10.603.0E-21172230IPR009057Homeodomain-like
SuperFamilySSF466891.77E-14173230IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-22173226IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MESLEGLRVL VVDDDATCLQ IIGTMLRSCK YIECIDANEA LNLLRSHLNC FDLVLTDIEM  60
PGMNGFQLLE CILQENTDTP VVMMSVDDKI ETMIKSIQKG AYFYLTKPLK MELVMTLWQF  120
VMVKNREKSI GNISQNSMTP SLIDQSNNKG KSIMKAHGKQ PIKDNKKVPK EIKPMVVWDS  180
YLHDKFIEAI QIIGPHRAVP KHILEEMNVP GLTRENVASH LQKFRLYIKK RKEKDFHRTF  240
GGNNHGFSNP TQFISMETPP QMAQQHMTTP ITQVNNFETY YESLAKNQQM LFNAHNSSLP  300
DVPPNIRIDL SQPVIGMNCN HMGTENAGEG NNQSDIEMED D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-16173230562ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PZT10.0A0A0K9PZT1_ZOSMR; Two-component response regulator ARR14
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59202345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.19e-57response regulator 2