PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma141g00270.1 | ||||||||
Common Name | ZOSMA_141G00270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34100.1 Da PI: 5.8948 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.4 | 5.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv ++k G g+W++ + g+ R++k+c++rw +yl Zosma141g00270.1 14 KGKWTAEEDEKLVSYIKANGEGSWRSMPINAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.8e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE+e++ ++ + lG++ W++Ia ++ gRt++++k++w+++l Zosma141g00270.1 67 RGNISPEEEEIIGRLQASLGNR-WSLIATHLV-GRTDNEIKNHWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.199 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.05E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.639 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-13 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.58E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRAPCCAKV GLKKGKWTAE EDEKLVSYIK ANGEGSWRSM PINAGLLRCG KSCRLRWINY 60 LKDDLKRGNI SPEEEEIIGR LQASLGNRWS LIATHLVGRT DNEIKNHWNS HLSRKLQLQR 120 CPEIPLPVKK KRGRKPKSVI VGANDGRGKT PSRVRKLKQT SGDNKNADSV DGEKKKKNTT 180 DTITGDGNNP VIAPVECNGA PSSGLTSENN GSSGGEFDMG ELENMLLLDN FEEMTWNVDN 240 VNYNRIWENI IDDSFFQPLV EITMNDNNDG EDEYRNLDRW FDPEFYTADS KWIDPEFYTT 300 DG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-21 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021668816.1 | 1e-66 | transcription factor MYB111-like | ||||
Swissprot | O22264 | 2e-61 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | A0A0K9PZX5 | 0.0 | A0A0K9PZX5_ZOSMR; Uncharacterized protein | ||||
STRING | cassava4.1_008985m | 3e-64 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-63 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Zosma141g00270.1 |