PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma13g00280.1

Common Name

ZOSMA_13G00280

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

G2-like

Protein Properties

Length: 348aa MW: 39495.9 Da PI: 7.9524

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma13g00280.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.9	5.3e-34	41	95	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLH+rFv+av+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl Zosma13g00280.1 41 KPRLKWTPELHDRFVDAVNQLGGPDKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 95 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.58	38	98	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.9E-32	39	95	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.84E-17	40	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-24	41	96	IPR006447	Myb domain, plants
Pfam	PF00249	6.1E-10	43	94	IPR001005	SANT/Myb domain
Pfam	PF14379	5.6E-24	141	187	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence Send to blast
MYHHRGKNIS SRLSFGHDRH LFLQDSNAQC DNGLVLSTDA KPRLKWTPEL HDRFVDAVNQ 60 LGGPDKATPK TVMRLMGIPG LTLYHLKSHL QKYRLGKNLH AQSNGVTKTG ASILASSERT 120 SPEISGTLIL NKNQINNKSL QISEALQMQI EVQQRLHEQL EVQRHLQLRI EAQGKYLHSV 180 LEKAQETLGY QNLGSAGLEA IKETFLVSND DRLNTAFQPS MVDLQKLKTQ TPAASECQLD 240 SCLTSCDHKD VSHMSNVKMS LKICDKQQDN NDDIINQRKT TKEEDIRIMQ HQHQPWLPEK 300 MKNSKGFKLH IMPEPQLDLN CRSQNDDVQT SKHFDLNGLF ELELLEK*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence Send to blast

MYHHRGKNIS SRLSFGHDRH LFLQDSNAQC DNGLVLSTDA KPRLKWTPEL HDRFVDAVNQ  60
LGGPDKATPK TVMRLMGIPG LTLYHLKSHL QKYRLGKNLH AQSNGVTKTG ASILASSERT  120
SPEISGTLIL NKNQINNKSL QISEALQMQI EVQQRLHEQL EVQRHLQLRI EAQGKYLHSV  180
LEKAQETLGY QNLGSAGLEA IKETFLVSND DRLNTAFQPS MVDLQKLKTQ TPAASECQLD  240
SCLTSCDHKD VSHMSNVKMS LKICDKQQDN NDDIINQRKT TKEEDIRIMQ HQHQPWLPEK  300
MKNSKGFKLH IMPEPQLDLN CRSQNDDVQT SKHFDLNGLF ELELLEK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-21	40	97	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017629911.1	1e-100	PREDICTED: myb-related protein 2-like
Refseq	XP_017629912.1	1e-100	PREDICTED: myb-related protein 2-like
Refseq	XP_022746537.1	1e-100	myb-related protein 2-like
Refseq	XP_022746538.1	1e-100	myb-related protein 2-like
Swissprot	Q9SQQ9	2e-85	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A0K9Q001	0.0	A0A0K9Q001_ZOSMR; Uncharacterized protein
STRING	XP_010036186.1	1e-98	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	2e-87	G2-like family protein

Link Out ? help Back to Top
Phytozome	Zosma13g00280.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]