PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma13g00110.1
Common NameZOSMA_13G00110
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NAC
Protein Properties Length: 408aa    MW: 45220.3 Da    PI: 6.1985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma13g00110.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.51.4e-32532141128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.........................vikev.diykvePwdLpkkvkaeekewyfFskrdkky 68 
                      lp+G++F+Ptd+el+ e+L++kv  ++++  +                         +i+   +i++++P++Lp  v+ +  + +fF++ +k+y
  Zosma13g00110.1  53 LPAGVKFDPTDQELI-EHLEAKVIVRSTNDGDavvvvvddddrdynkshplidefipTIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAY 144
                      799************.99**99888874443346666777888999999999998765777647**********.555666799********** PP

              NAM  69 atgkrknra.........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +tg+rk+r+           + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zosma13g00110.1 145 TTGTRKRRKvqtddcdlqGGETRWHKTGKTRPVIV-GGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 214
                      ********746555554433778************.99************5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-3647233IPR003441NAC domain
PROSITE profilePS5100529.80553233IPR003441NAC domain
PfamPF023653.2E-1554214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MSRNQIDSVS SSDLIDAKLE EHQMYGSTRR CPSCGTKLEY SAPPRTTLDW VGLPAGVKFD  60
PTDQELIEHL EAKVIVRSTN DGDAVVVVVD DDDRDYNKSH PLIDEFIPTI EGEDGICYTH  120
PEKLPGVTRD GLSKHFFHRP SKAYTTGTRK RRKVQTDDCD LQGGETRWHK TGKTRPVIVG  180
GKQKGCKKIL VLYTNFGKHR KPEKTNWVMH QYHLGESEEE KEGELVVSKI FYQTQPRQCN  240
WSTERQAAAA AAVAVSAGRE SGSGSSSSTK ELSSVAGFSA NEYNDNFSFA PFRKSFDEVD  300
MTGDAVTGGK ATPVVSATPS YHPFSGILSP VGALQQSIVN LEDPYRFLIQ QQQQQKIVGR  360
PASGLEELIM GFPSGSLRGE PSISNPQEQE WLKYQYWPDP DNPDHHG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244411.11e-171PREDICTED: uncharacterized protein LOC104588253 isoform X2
SwissprotO494597e-95NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A0K9PXS10.0A0A0K9PXS1_ZOSMR; Putative NAC domain-containing protein 21/22
STRINGXP_010244406.11e-169(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-112NAC domain containing protein 75
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]