PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma137g00180.1

Common Name

ZOSMA_137G00180

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

bHLH

Protein Properties

Length: 396aa MW: 42559.8 Da PI: 6.72

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma137g00180.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.5	2.8e-14	192	238	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Zosma137g00180.1 192 KSHSEAERRRRERINTHLARLRSLLPST-----TKTDKASLLAEVIQHVKEL 238 79***********************9.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.882	189	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.0E-11	192	238	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-14	193	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-15	193	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-13	195	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.04E-5	202	241	No hit	No description
Gene3D	G3DSA:3.30.70.260	2.5E-5	276	348	No hit	No description
CDD	cd04873	4.67E-9	276	348	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MELYKGDEGS SPSNSTSISE AIFQTFHPPA PPSSVTHHHN TQDRSVVAAA AATTAAESSG 60 GVGLISQLQG FNILPSQSLP LPIASILANS SNQMYSSTTH DHVPPIYHYQ QQQMHQLQQN 120 QQLYSSLLPP PHMPLYGSDH VVLPPIGMPT GFYVGGSGGG GTSLTPFSCL QSEFGKMSAQ 180 EMMDAKALAA SKSHSEAERR RRERINTHLA RLRSLLPSTT KTDKASLLAE VIQHVKELKR 240 QAAEIVEQIS VPTECDELTV HSANEEEGGK LVVKASICCD DRSDLLSEVI KALKALKLRT 300 LKAEITTLGG RVKNVLVVTE EDVDCMNPDE SKHHYSITSI QDALKAVMER TTSAPDANNN 360 DPSSSSSSAN KPTGTGTSTK KQRTTNLSSI LEKNL*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MELYKGDEGS SPSNSTSISE AIFQTFHPPA PPSSVTHHHN TQDRSVVAAA AATTAAESSG  60
GVGLISQLQG FNILPSQSLP LPIASILANS SNQMYSSTTH DHVPPIYHYQ QQQMHQLQQN  120
QQLYSSLLPP PHMPLYGSDH VVLPPIGMPT GFYVGGSGGG GTSLTPFSCL QSEFGKMSAQ  180
EMMDAKALAA SKSHSEAERR RRERINTHLA RLRSLLPSTT KTDKASLLAE VIQHVKELKR  240
QAAEIVEQIS VPTECDELTV HSANEEEGGK LVVKASICCD DRSDLLSEVI KALKALKLRT  300
LKAEITTLGG RVKNVLVVTE EDVDCMNPDE SKHHYSITSI QDALKAVMER TTSAPDANNN  360
DPSSSSSSAN KPTGTGTSTK KQRTTNLSSI LEKNL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	ERRRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020699818.1	1e-88	transcription factor bHLH30
Swissprot	Q9S7Y1	3e-69	BH030_ARATH; Transcription factor bHLH30
TrEMBL	A0A0K9PY53	0.0	A0A0K9PY53_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
STRING	XP_008782353.1	2e-82	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Zosma137g00180.1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ohashi-Ito K, et al. A bHLH complex activates vascular cell division via cytokinin action in root apical meristem. Curr. Biol., 2014. 24(17): p. 2053-8 [PMID:25131670] Katayama H, et al. A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem. Curr. Biol., 2015. 25(23): p. 3144-50 [PMID:26616019]