PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma136g00240.1
Common NameZOSMA_136G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ARR-B
Protein Properties Length: 433aa    MW: 49016.3 Da    PI: 5.6568
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma136g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like50.15.9e-16198241145
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 
                       kpr++Wt+ LH++Fv+av+ L G++kA+Pk+il l+  + Lt+e+
  Zosma136g00240.1 198 KPRVVWTHRLHQKFVDAVNLL-GIDKAVPKKILSLIPGENLTREN 241
                       79*******************.********************987 PP
2Response_reg80.17.5e-27281361109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl vdD+++ ++ll+++l++ +y +v++a  +++al +l+ek+  +Dl++ D++mp+mdG++llk    e +++p+i++++h++ e++ + ++
  Zosma136g00240.1  28 VLAVDDDQVCLKLLENLLRRCQY-DVTTANRATKALSILREKKdeFDLVISDVNMPDMDGIKLLKVVGIE-MNIPVIMLSTHSDTETIMQGIN 118
                       799********************.***************888889*******************998554.59******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga  +l Kp   eel +
  Zosma136g00240.1 119 CGACNYLLKPARLEELKN 136
                       **************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521728.4E-3625157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4025169No hitNo description
SMARTSM004482.2E-3126138IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.67327142IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.6E-2428136IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.53E-2729142No hitNo description
SuperFamilySSF466893.76E-9196244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-15196241IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-14198241IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MMEDIESVVT AGGLSGDKKN EFPIGMRVLA VDDDQVCLKL LENLLRRCQY DVTTANRATK  60
ALSILREKKD EFDLVISDVN MPDMDGIKLL KVVGIEMNIP VIMLSTHSDT ETIMQGINCG  120
ACNYLLKPAR LEELKNIWQH VIRKRIFSRG TKLQLHGNFN NQITITQTHH VEDSKEENVD  180
DQDHKFNEAS SFSSSKKKPR VVWTHRLHQK FVDAVNLLGI DKAVPKKILS LIPGENLTRE  240
NKHRQNLKKS PALGELQLQL HRFSNHQFNY PFFESSRRNL GLNHMDSYTG FGDVYLPSPF  300
YSTHDQSNKF GQLFGIPEYH PPPLPDPIVS WTDSMQKQQE GGEYPLLQDV IMNNPVDVDH  360
EHLGFQSSSM EDQINNGVLS AVGKIMNGAH HDQTTDDYND FIGVPIADNS INTADSYDIN  420
ILSVQDFDQF DV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4h60_A3e-14271424120Chemotaxis protein CheY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570765.12e-80two-component response regulator ORR24
RefseqXP_010929130.16e-80two-component response regulator ORR22
RefseqXP_019707776.16e-80two-component response regulator ORR22
RefseqXP_019707777.16e-80two-component response regulator ORR22
RefseqXP_022754525.16e-80two-component response regulator ORR24-like
SwissprotA2X1N22e-79ORR24_ORYSI; Two-component response regulator ORR24
SwissprotQ6H8053e-79ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLA0A0K9PYG80.0A0A0K9PYG8_ZOSMR; Uncharacterized protein
STRINGGSMUA_Achr10P06040_0016e-81(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1950623
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.18e-77response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]